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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSTIDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKS
RRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNI

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j92:u 130 130 1.0000 1.0000 1.0000 2.56e-95
2 8aaf:a 848 113 0.3385 0.0519 0.3894 2.00e-22 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
3 8s1u:H 518 128 0.2923 0.0734 0.2969 4.84e-07
4 7aqc:R 558 128 0.2923 0.0681 0.2969 5.04e-07 7aqd:R, 7as8:0, 7as9:0, 7asa:0, 7ope:0
5 2owb:A 294 49 0.1000 0.0442 0.2653 0.21 4a4l:A, 4a4o:A, 8bjt:A, 3fc2:A, 4j52:A, 4j53:A, 3kb7:A, 2ou7:A, 2rku:A, 5ta6:A, 5ta8:A, 3thb:A, 8x72:A, 2yac:A
6 7p8n:a 642 37 0.1154 0.0234 0.4054 0.24 7p5h:A, 7p5h:D, 7p5h:a, 7p5h:d, 7p8n:A, 7p91:a, 7p91:A, 7p92:A
7 3db8:A 261 40 0.1000 0.0498 0.3250 0.32 3dbc:A, 3dbd:A, 3dbf:A
8 3db6:A 287 40 0.1000 0.0453 0.3250 0.33 3d5w:A, 3d5x:A, 3dbe:A
9 8ab6:D 244 43 0.1077 0.0574 0.3256 2.4 8ab6:O, 8ab7:D, 8ab7:O, 8ab8:D, 8ab8:O, 8ab9:D, 8ab9:O, 8aba:D, 8aba:O, 8abb:D, 8abb:O, 8abe:D, 8abe:O, 8abf:D, 8abf:O, 8abg:D, 8abg:O, 8abh:D, 8abh:O, 8abi:D, 8abi:O, 8abj:D, 8abj:O, 8abk:D, 8abk:O, 8abl:D, 8abl:O, 8abm:D, 8abm:O, 8ac3:D, 8ac3:O, 8ac4:D, 8ac4:O, 8ac5:D, 8ac5:O
10 3ecq:B 1347 60 0.1308 0.0126 0.2833 2.4 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A
11 4xdd:A 582 34 0.1000 0.0223 0.3824 3.4 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
12 8a6t:A 571 46 0.0923 0.0210 0.2609 4.8 8a6t:D, 8bew:A, 8bew:D
13 4ij6:A 207 44 0.1154 0.0725 0.3409 5.4 4ij6:B
14 3c0z:C 359 42 0.1231 0.0446 0.3810 6.2 3c0y:C, 3c10:C, 3znr:C, 3zns:C
15 3c0y:A 386 42 0.1231 0.0415 0.3810 6.4 3c0y:B, 3c0z:A, 3c0z:B, 3c10:A, 3c10:B, 3znr:A, 3znr:B, 3zns:A, 3zns:B
16 4tlg:A 396 50 0.1308 0.0429 0.3400 7.0 4tlg:B
17 3zha:A 380 93 0.2154 0.0737 0.3011 7.2 4au2:A, 4au2:B, 4au2:D, 4au3:A, 4au3:B, 4au3:C, 4au3:D, 7bdu:A, 7bdu:B, 7bee:A, 7bee:B, 7bfi:A, 7bfi:C, 7bfi:D, 7bfi:B, 3zha:B, 3zha:C, 3zha:D, 3zha:K, 3zha:L, 3zha:P, 3zha:Q
18 6rey:c 1773 78 0.1615 0.0118 0.2692 9.7 6rey:d
19 6qdj:A 758 87 0.1462 0.0251 0.2184 9.7
20 6kwy:c 1811 78 0.1615 0.0116 0.2692 9.9 8cvs:c, 6kwx:A, 7naq:c

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218