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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSPVPSPEGTKETYWETKAPSSDVLGIGAGVSSGNFAAASVFAALVGGYCTGQVIPLTVEPNPLFLAGSFLLPYSWALHV
AAWIQKNNGK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wm6:R 90 90 1.0000 1.0000 1.0000 1.99e-61 8wmj:R, 8wmv:R, 8wmw:R
2 7y7b:R 92 90 0.7889 0.7717 0.7889 5.11e-43 7y8a:R
3 7y5e:RN 78 75 0.3444 0.3974 0.4133 1.43e-10 7y5e:R2, 7y7a:R7, 7y7a:Ro
4 6l4u:2u 89 88 0.3333 0.3371 0.3409 8.91e-07 6ly5:h
5 8jw0:h 132 86 0.3111 0.2121 0.3256 1.74e-05
6 8jze:h 131 29 0.1556 0.1069 0.4828 0.002 8jzf:h
7 8jjr:r 131 29 0.1556 0.1069 0.4828 0.004
8 5fal:A 435 58 0.1778 0.0368 0.2759 2.2 5fan:A, 4kec:A
9 2oi6:B 452 56 0.2000 0.0398 0.3214 2.5 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B
10 4fe1:F 141 35 0.1444 0.0922 0.3714 3.9 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
11 7r8b:B 564 25 0.1222 0.0195 0.4400 6.5
12 4mnp:A 305 38 0.1556 0.0459 0.3684 6.8
13 7r89:B 529 25 0.1222 0.0208 0.4400 7.4
14 6hqb:F 143 66 0.2111 0.1329 0.2879 8.2 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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