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BioLiP
>protein
FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV
EPLKLYLQKFRE

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4awl:B 92 92 1.0000 1.0000 1.0000 1.86e-65 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
2 7aw7:B 92 92 0.7500 0.7500 0.7500 7.44e-50 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
3 6r2v:B 93 91 0.7174 0.7097 0.7253 1.57e-48 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
4 7c9o:B 85 85 0.6304 0.6824 0.6824 1.86e-41
5 1jfi:B 135 85 0.3587 0.2444 0.3882 1.95e-17
6 4wzs:B 113 74 0.2935 0.2389 0.3649 2.07e-10
7 1a7w:A 68 64 0.2500 0.3382 0.3594 2.51e-05 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
8 7aw9:C 118 65 0.2174 0.1695 0.3077 0.017 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
9 6qmq:C 84 79 0.2609 0.2857 0.3038 0.063 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
10 6so9:A 112 35 0.1522 0.1250 0.4000 2.3
11 1yfr:A 448 77 0.2174 0.0446 0.2597 3.3 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A
12 7d69:D 96 41 0.1522 0.1458 0.3415 3.5 7d69:H
13 7d69:B 78 54 0.1087 0.1282 0.1852 3.9 7d69:F
14 8je1:A 675 56 0.1304 0.0178 0.2143 5.9
15 6kxv:E 95 67 0.1739 0.1684 0.2388 6.3 6kxv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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