Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FRAADPLVGVFLWGVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDRFGIDDQ
DYLVSLTRNPPSESEGSDGRFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSYM
LVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLKDMDFLNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMD
YSLLLGIHDIIRLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKHPEQYAKRFLDFITNIF

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qpn:A 317 316 0.9839 0.9653 0.9684 0.0 8bq4:A, 8bq4:B, 7qie:A, 7qie:B, 7qie:C, 7qie:D, 7qpn:B
2 3x03:A 320 324 0.6881 0.6687 0.6605 9.95e-157 7em1:A, 7em1:B, 7em2:A, 7em2:B, 7em3:A, 7em4:A, 7em4:B, 7em5:A, 7em6:A, 7em7:A, 7em8:A, 6k4g:A, 6k4g:B, 6k4h:A, 6k4h:B, 3x01:A, 3x02:A, 3x02:B, 3x03:B, 3x04:A, 3x04:B, 3x05:A, 3x05:B, 3x06:A, 3x06:B, 3x07:A, 3x08:A, 3x09:A, 3x09:B, 3x0a:A, 3x0a:B, 3x0b:A, 3x0b:B, 3x0c:A, 3x0c:B
3 6ym4:A 322 321 0.6785 0.6553 0.6573 4.69e-154 7n7j:A, 7n7k:A, 7n7l:A, 7n7m:A, 7n7n:A, 7n7o:A, 6osp:A, 6osp:B, 6ux9:A, 6ux9:B, 6ym3:A, 6ym3:B, 6ym4:B, 6ym5:A, 6ym5:B
4 7em5:B 297 313 0.6656 0.6970 0.6613 2.77e-148 7em6:B
5 8c8c:A 297 312 0.6495 0.6801 0.6474 2.11e-143
6 7n81:B 307 328 0.6399 0.6482 0.6067 4.09e-136 3x01:B
7 6cmw:A 307 317 0.3473 0.3518 0.3407 4.37e-44 6cn2:A, 5e3t:A, 5e3u:A
8 1a47:A 683 54 0.0611 0.0278 0.3519 0.97 3bmv:A, 3bmw:A, 1ciu:A
9 1cyg:A 680 50 0.0514 0.0235 0.3200 2.0
10 6zvn:AAA 404 143 0.1125 0.0866 0.2448 2.2
11 2djh:A 96 32 0.0354 0.1146 0.3438 4.6 2a8k:D, 2a8k:C, 2a8k:B, 2a8k:A, 3vj7:A
12 4e4f:B 381 45 0.0482 0.0394 0.3333 5.6 4e4f:C, 4il2:A, 4il2:C, 4il2:D
13 6vox:A 407 58 0.0514 0.0393 0.2759 6.1
14 2np0:A 1289 151 0.1029 0.0248 0.2119 6.5 1epw:A, 2etf:A, 2etf:B, 1f31:A, 1f82:A, 6g5f:B, 6g5g:B, 6g5k:A, 6g5k:B, 1g9a:A, 1g9b:A, 1g9c:A, 1g9d:A, 1i1e:A, 4kbb:A, 4kbb:B, 7na9:A, 2nm1:A, 6qns:A, 1s0b:A, 1s0c:A, 1s0d:A, 1s0e:A, 1s0f:A, 7t5f:A, 7t5f:D, 2xhl:A, 3zuq:A, 6zvm:AAA
15 5nbs:A 842 76 0.0643 0.0238 0.2632 7.3 5nbs:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218