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BioLiP
>protein
FQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFA
FIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARS

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dxd:A 131 124 1.0000 0.9466 1.0000 9.28e-91 3dxc:A, 3dxc:C, 3dxd:C, 3dxe:A, 3dxe:C
2 6itu:A 146 129 0.2339 0.1986 0.2248 3.68e-05
3 2nmb:A 147 124 0.2984 0.2517 0.2984 1.57e-04 1ddm:A, 5yi7:A, 5yi7:C, 5yi8:A
4 7btq:A 474 41 0.1290 0.0338 0.3902 0.33 7btq:D
5 3gh6:A 209 71 0.1613 0.0957 0.2817 0.56
6 3d8f:A 127 76 0.1452 0.1417 0.2368 1.2 3d8f:C
7 3so6:A 137 102 0.1774 0.1606 0.2157 1.2
8 6ueb:A 2099 75 0.1613 0.0095 0.2667 2.1
9 8ras:C 726 28 0.0645 0.0110 0.2857 2.5
10 1j49:A 332 94 0.2016 0.0753 0.2660 3.2 1j49:B
11 6sga:DU 219 32 0.0887 0.0502 0.3438 5.8 6hiv:DU, 6hiw:DU, 6hiy:DU, 7pua:DU, 7pub:DU, 6sgb:DU
12 4cog:A 207 63 0.1371 0.0821 0.2698 6.0 4cog:B, 4cog:C, 4cog:D
13 8wa0:B 973 28 0.0645 0.0082 0.2857 6.5 8w9z:B
14 8wa1:B 998 28 0.0645 0.0080 0.2857 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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