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BioLiP
>protein
FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yg1:A 72 69 0.9718 0.9583 1.0000 1.04e-46 3dnv:B, 3hzi:B, 5k98:B, 5k98:P, 4yg1:B, 4yg1:C, 4yg1:D, 4yg4:A, 4yg4:B, 4yg4:D, 4yg7:B, 4yg7:E, 4yg7:C, 4yg7:G, 4z58:A, 4z59:A, 4z5c:A, 4z5c:B, 4z5d:A, 4z5d:B, 4z5h:A
2 8tac:B 66 60 0.2676 0.2879 0.3167 1.06e-05
3 2xiu:A 66 48 0.2394 0.2576 0.3542 0.002
4 1b0n:A 103 64 0.2817 0.1942 0.3125 0.004 3zkc:A, 3zkc:B
5 3kxa:A 131 48 0.2394 0.1298 0.3542 0.014 3kxa:B, 3kxa:C, 3kxa:D
6 2or1:L 63 36 0.1972 0.2222 0.3889 0.15 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
7 3fym:A 82 36 0.1831 0.1585 0.3611 0.16
8 8zh8:R 325 30 0.1549 0.0338 0.3667 0.51 8wz2:R
9 2fbh:A 137 44 0.1408 0.0730 0.2273 1.3
10 5gpc:A 190 49 0.1972 0.0737 0.2857 1.4 5gpc:B, 5gpc:C, 5gpc:D
11 3cro:L 66 47 0.2394 0.2576 0.3617 5.1 3cro:R
12 2xr1:B 611 42 0.1408 0.0164 0.2381 5.6 2xr1:A
13 1p9b:A 424 19 0.1408 0.0236 0.5263 5.9
14 7kz9:A 478 32 0.1549 0.0230 0.3438 9.6 7kz9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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