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BioLiP
>protein
FQGMTKKEILEKLPEGWKYTENNGFVHVRDANDTIRMRIAPPDKVTKYDHVHLYDENKNPLDLNGNIVDPDAHIPY

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8owu:B 76 76 1.0000 1.0000 1.0000 4.21e-53
2 2zc0:A 405 76 0.3158 0.0593 0.3158 0.043 2zc0:B, 2zc0:C, 2zc0:D
3 7cmy:C 417 34 0.1842 0.0336 0.4118 1.1
4 6yo9:A 398 42 0.1579 0.0302 0.2857 1.2 6twk:A, 6twk:B, 6yo9:B
5 1umb:D 323 28 0.1447 0.0341 0.3929 1.3 1umb:B, 1umc:D, 1umc:B, 1umd:D, 1umd:B
6 5uqz:A 354 24 0.1447 0.0311 0.4583 1.7 6cam:A
7 7tom:A 498 26 0.1316 0.0201 0.3846 3.4 7tol:A
8 5agy:A 219 34 0.1842 0.0639 0.4118 4.5 5agy:B, 4chs:A, 4chs:B, 4top:A, 4top:B, 2vo4:A, 2vo4:B
9 3l8p:A 292 18 0.1184 0.0308 0.5000 4.9 6mwe:A, 6mwe:B, 2oo8:X, 2osc:A, 2p4i:A, 2p4i:B, 2wqb:A, 4x3j:A
10 5b36:B 383 30 0.1842 0.0366 0.4667 6.2 5b36:A, 5b3a:A, 5b3a:B, 6l0p:A, 6l0p:B, 6l0p:C, 6l0p:D, 6l0q:A, 6l0q:B, 6l0q:C, 6l0q:D, 6l0r:A, 6l0r:B, 6l0r:C, 6l0r:D, 6l0s:A, 6l0s:B, 6l0s:C, 6l0s:D, 3vsa:A, 3vsa:B, 3vsc:A, 3vsc:B, 3vsd:A, 3vsd:B, 1wkv:A, 1wkv:B
11 2fon:B 656 49 0.2237 0.0259 0.3469 6.4 2fon:A, 2fon:C
12 7vf6:A 366 15 0.1184 0.0246 0.6000 6.8 7vf6:B
13 9bh5:CH 188 24 0.1447 0.0585 0.4583 8.0 9cai:CH
14 2h57:B 167 32 0.1316 0.0599 0.3125 9.2 2h57:A, 2h57:C, 6vbv:3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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