Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xrm:B 64 60 1.0000 0.9375 1.0000 4.81e-41 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
2 6fqp:A 67 57 0.4833 0.4328 0.5088 8.16e-17 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
3 1lfu:P 82 51 0.4333 0.3171 0.5098 1.82e-15 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4egc:A 539 44 0.3667 0.0408 0.5000 1.24e-08
5 1mnm:C 77 51 0.2500 0.1948 0.2941 4.42e-05 1mnm:D
6 1akh:B 78 51 0.2500 0.1923 0.2941 6.04e-05 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
7 1le8:A 53 27 0.2167 0.2453 0.4815 0.004 1akh:A, 1yrn:A
8 2d5v:A 135 30 0.2333 0.1037 0.4667 0.012 2d5v:B, 8t0f:A, 8t11:A
9 7qdw:A 72 29 0.2167 0.1806 0.4483 0.052
10 5hod:A 61 30 0.2000 0.1967 0.4000 0.17 5hod:D
11 4rdu:D 62 42 0.2833 0.2742 0.4048 0.28 4rdu:A, 4xrs:I, 4xrs:G
12 1fjl:A 65 32 0.2167 0.2000 0.4062 0.30 1fjl:B, 1fjl:C
13 6e8c:A 135 33 0.2167 0.0963 0.3939 0.42 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
14 6e8c:A 135 31 0.1833 0.0815 0.3548 1.6 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
15 8ik5:C 67 28 0.1833 0.1642 0.3929 0.45 8ike:C, 8ilw:C
16 6kop:F 159 34 0.2167 0.0818 0.3824 0.49 6koq:F
17 8osb:E 62 32 0.2500 0.2419 0.4688 0.93
18 3cmy:A 60 34 0.2500 0.2500 0.4412 1.2
19 3a01:F 61 32 0.2167 0.2131 0.4062 1.9 3a01:B, 3lnq:A
20 4j19:A 77 25 0.1833 0.1429 0.4400 3.2 4j19:B
21 5f1a:A 553 32 0.1833 0.0199 0.3438 3.3 5f19:A, 5f19:B, 5f1a:B, 5ikq:A, 5ikq:B, 5ikr:A, 5ikr:B, 5ikt:A, 5ikt:B, 5ikv:A, 5ikv:B, 5kir:A, 5kir:B
22 6jcx:F 186 36 0.2000 0.0645 0.3333 3.4 6kon:F, 6koo:F, 5zx2:F
23 8g8e:X 140 35 0.2167 0.0929 0.3714 3.8 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
24 6b9v:A 254 17 0.1333 0.0315 0.4706 4.7 6b9v:B
25 4rzm:B 283 38 0.1833 0.0389 0.2895 5.9 3rga:A, 4rzm:A
26 3rkq:A 58 29 0.2167 0.2241 0.4483 6.9 3rkq:B
27 2c9o:A 398 45 0.2500 0.0377 0.3333 7.9 2c9o:B
28 5flv:M 229 31 0.2167 0.0568 0.4194 8.2 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
29 6es3:K 72 29 0.2000 0.1667 0.4138 8.2 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218