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BioLiP
>protein
FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREA
EYFQLPDLVKLLT

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ocp:B 99 96 1.0000 0.9394 0.9688 3.36e-62 6m8r:A, 6m8r:F, 6ocp:C, 6ocp:D, 6ocp:E, 6ocp:F, 6ocp:G, 6ocp:H, 6ocp:K, 6ocp:L, 6ocp:M, 6ocp:N
2 6sga:FS 277 66 0.2688 0.0903 0.3788 1.00e-04 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU
3 2i2r:L 138 68 0.2581 0.1739 0.3529 5.15e-04 2i2r:A, 2i2r:C, 2i2r:D, 2i2r:I, 2i2r:J, 2i2r:K, 2nz0:B, 2nz0:D, 1s1g:A, 1s1g:B
4 2i2r:B 124 68 0.2581 0.1935 0.3529 5.70e-04
5 7e8e:D 459 69 0.2366 0.0479 0.3188 0.006 7e87:B, 7e87:A, 7e87:C, 7e87:D, 7e8e:B, 1nn7:A, 7ukg:A, 7ukg:B, 7ukg:C, 7ukg:D
6 7ukh:A 203 71 0.2473 0.1133 0.3239 0.019 7ukh:B, 7ukh:C, 7ukh:D
7 8quc:A 395 72 0.2473 0.0582 0.3194 0.18 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
8 1t3q:B 786 35 0.1505 0.0178 0.4000 0.42 1t3q:E
9 3d7t:A 249 60 0.1398 0.0522 0.2167 0.63 1byg:A
10 8osg:F 258 88 0.2796 0.1008 0.2955 2.6
11 4ttb:A 189 18 0.0860 0.0423 0.4444 7.3 4ttb:B
12 5juy:B 1234 35 0.1720 0.0130 0.4571 8.3 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
13 4ttc:A 220 18 0.0860 0.0364 0.4444 9.1 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
14 6t2o:BBB 242 27 0.0753 0.0289 0.2593 9.9 6t2o:AAA, 6t2p:AAA, 6t2p:BBB, 6t2q:AAA, 6t2q:BBB
15 8iuf:C1 495 30 0.1398 0.0263 0.4333 9.9 8iuj:c1, 8iuj:C1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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