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BioLiP
>protein
FNLQDRFLNHLRVNKIEVKVYLVNGFQTKGFIRSFDSYTVLLESGNQQSLIYKHAISTIIPSSYVM

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4y91:F 73 66 1.0000 0.9041 1.0000 3.02e-44 4y91:G, 4y91:H, 4y91:I, 4y91:J, 4y91:K, 4y91:L, 4y91:A, 4y91:B, 4y91:C, 4y91:D, 4y91:E
2 5sze:A 71 61 0.5303 0.4930 0.5738 5.34e-22
3 3hsb:B 69 64 0.5303 0.5072 0.5469 4.17e-20 3ahu:A, 3ahu:B, 3ahu:C, 3hsb:A, 3hsb:C, 3hsb:D, 3hsb:F
4 4nl3:F 75 63 0.5000 0.4400 0.5238 4.44e-17 4nl3:D, 4nl3:A, 4nl3:B, 4nl3:J, 4nl3:G, 4nl3:H, 4nl3:C, 4nl3:E, 4nl3:I, 4nl3:K, 4nl3:L
5 4v2s:A 71 64 0.4848 0.4507 0.5000 1.04e-16 7ogm:D, 4v2s:B, 4v2s:C, 4v2s:D, 4v2s:E, 4v2s:F, 2ylc:A
6 1kq2:H 62 57 0.4545 0.4839 0.5263 2.69e-16 1kq2:A, 1kq2:B, 1kq2:I, 1kq2:K, 1kq2:M, 3qsu:A, 3qsu:B, 3qsu:H, 3qsu:C, 3qsu:E, 3qsu:F, 3qsu:D, 3qsu:S
7 3m4g:F 71 64 0.4545 0.4225 0.4688 4.32e-15 8bvh:w, 8bvh:x, 8bvh:D, 8bvh:E, 8bvh:F, 8bvh:R, 8bvh:T, 8bvh:J, 8bvh:L, 8bvh:N, 8bvh:P, 8bvh:S, 8bvh:U, 8bvh:K, 8bvh:M, 8bvh:O, 8bvh:Q, 8bvj:R, 8bvj:L, 8bvj:N, 8bvj:P, 8bvj:X, 8bvj:Y, 8bvj:S, 8bvj:U, 8bvj:W, 8bvj:K, 8bvj:M, 8bvj:D, 8bvj:F, 8bvj:I, 8bvm:B, 8bvm:C, 8bvm:D, 8bvm:E, 8bvm:F, 8bvm:G, 8bvm:I, 8bvm:J, 8bvm:K, 8bvm:L, 8bvm:O, 3gib:A, 3gib:B, 3gib:C, 4ht8:A, 4ht8:B, 4ht8:E, 4ht8:F, 4ht8:C, 4ht8:D, 4ht9:A, 4ht9:B, 4ht9:C, 4j5y:A, 4j5y:F, 4j5y:B, 4j5y:C, 4j5y:D, 4j5y:E, 4j6w:A, 4j6w:E, 4j6w:B, 4j6w:C, 4j6w:F, 4j6w:D, 4j6x:A, 4j6x:B, 4j6x:C, 4j6x:D, 4j6x:E, 4j6x:F, 3m4g:A, 3m4g:C, 3m4g:E, 3m4g:G, 3m4g:I, 3m4g:K, 3m4g:L, 4mmk:A, 4mmk:E, 4mmk:K, 4mml:A, 5new:A, 5new:B, 6o1k:I, 6o1k:J, 6o1k:K, 6o1k:L, 6o1k:M, 6o1k:N, 6o1k:C, 6o1k:D, 6o1k:E, 6o1k:F, 6o1k:G, 6o1k:H, 6o1l:I, 6o1l:J, 6o1l:K, 6o1l:L, 6o1l:M, 6o1l:N, 6o1l:C, 6o1l:D, 6o1l:E, 6o1l:F, 6o1l:G, 6o1l:H, 6o1m:I, 6o1m:J, 6o1m:K, 6o1m:L, 6o1m:M, 6o1m:N, 6o1m:C, 6o1m:D, 6o1m:E, 6o1m:F, 6o1m:G, 6o1m:H, 7ogm:K, 7ogm:J, 7ogm:I, 7ogm:E, 7ogm:F, 4pno:A, 3qo3:A, 3qo3:B, 3qo3:C, 3qo3:D, 3qo3:E, 3qui:A, 3qui:F, 3qui:B, 3qui:C, 3qui:D, 3qui:E, 4qvc:D, 4qvd:D, 4qvd:E, 3rer:A, 3rer:B, 3rer:C, 3rer:D, 3rer:E, 3rer:F, 3res:B, 3res:C, 3res:E, 3res:F, 3res:H, 3res:I, 3res:J, 3res:K, 3res:L, 3res:G, 5uk7:C
8 5dy9:E 60 48 0.2424 0.2667 0.3333 8.12e-05 5dy9:A, 5dy9:F, 5dy9:D, 5dy9:G, 5dy9:L, 4x9d:A, 4x9d:F, 4x9d:B, 4x9d:C, 4x9d:D, 4x9d:E
9 8h1r:D 789 37 0.1818 0.0152 0.3243 1.1 8h1r:A, 5iva:A
10 2xe4:A 721 54 0.2424 0.0222 0.2963 1.1
11 5h3t:C 657 25 0.1515 0.0152 0.4000 2.0 5h3t:A, 5h3t:B, 5h3t:D
12 5h1k:B 690 25 0.1515 0.0145 0.4000 2.0 5gxh:A, 5gxi:A, 5h1k:A, 5h1l:A, 5h1m:A, 5h3u:A, 5tef:A, 5tha:A
13 6gnc:A 287 28 0.1667 0.0383 0.3929 4.1
14 6zj3:SN 92 50 0.2273 0.1630 0.3000 4.9
15 5c3q:A 335 27 0.1667 0.0328 0.4074 5.1 5c3p:A, 5c3p:B, 5c3p:C, 5c3q:D, 5c3r:A, 5c3r:D, 5c3s:A, 5c3s:D
16 5c3q:B 311 27 0.1667 0.0354 0.4074 5.3 5c3o:A, 5c3p:D, 5c3q:C, 5c3r:B, 5c3r:C, 5c3s:B, 5c3s:C
17 8otv:A 212 32 0.1970 0.0613 0.4062 6.0 8otv:B
18 1ogo:X 572 27 0.1818 0.0210 0.4444 6.3
19 8h40:E 620 23 0.1667 0.0177 0.4783 8.3
20 5csl:B 2072 63 0.1970 0.0063 0.2063 8.3 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
21 5csl:A 2050 63 0.1970 0.0063 0.2063 9.0
22 2civ:A 299 34 0.1515 0.0334 0.2941 9.9 2ciw:A, 2cix:A, 2ciy:A, 2ciz:A, 2cj0:A, 2cj1:A, 2cj2:A, 1cpo:A, 2cpo:A, 2j18:A, 2j19:A, 2j5m:A, 7rst:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417