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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW
HFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFR
LWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPN
LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1d8d:A 323 312 0.9968 0.9628 0.9968 0.0 2bed:A, 1d8e:A, 3dpy:A, 3e33:A, 3e34:A, 3e37:A, 3eu5:A, 2f0y:A, 1fpp:A, 4gtr:A, 2h6f:A, 2h6g:A, 2h6h:A, 2h6i:A, 2iej:A, 1jcq:A, 1jcr:A, 1jcs:A, 3ksl:A, 1ld7:A, 1ld8:A, 1mzc:A, 1n4r:A, 1n4r:C, 1n4r:G, 1n94:A, 1ni1:A, 1o1r:A, 1o1t:A, 1o5m:A, 1qbq:A, 7rni:A, 1s63:A, 1sa4:A, 1sa5:A, 1tn6:A, 1tn7:A, 1tnb:A, 1tnb:E, 1tnb:G, 1tnb:C, 1tnb:I, 1tnb:K, 1tno:A, 1tno:C, 1tno:E, 1tno:G, 1tno:I, 1tno:K, 1tnu:A, 1tnu:C, 1tnu:E, 1tnu:G, 1tnu:I, 1tnu:K, 1tny:A, 1tny:C, 1tny:E, 1tny:G, 1tny:I, 1tny:K, 1tnz:C, 1tnz:I, 1tnz:A, 1tnz:E, 1tnz:K, 2zir:A, 2zis:A
2 4l9p:A 335 334 0.3814 0.3552 0.3563 1.76e-64
3 7t0e:A 318 316 0.3718 0.3648 0.3671 2.37e-63 3q73:A, 3q75:A, 3q78:A, 3q7a:A, 3q7f:A, 3sfy:A, 8t70:A
4 3pz2:A 298 189 0.1603 0.1678 0.2646 6.09e-15
5 6j7x:A 276 199 0.1506 0.1703 0.2362 3.98e-08
6 5dzc:A 816 84 0.0641 0.0245 0.2381 2.8 8em8:A, 5ezr:A, 5f0a:A, 5fet:A, 4ofg:A, 4rz7:A
7 3kd7:A 102 60 0.0481 0.1471 0.2500 5.1 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
8 6m5u:A 585 109 0.0994 0.0530 0.2844 8.7 4iox:C, 6m5v:A
9 2qee:E 424 57 0.0481 0.0354 0.2632 9.8 3hk5:A, 3hk5:B, 3hk7:A, 3hk7:B, 3hk7:C, 3hk7:D, 3hk7:F, 3hk7:E, 3hk7:G, 3hk7:I, 3hk7:H, 3hk7:J, 3hk7:L, 3hk7:K, 3hk8:A, 3hk8:B, 3hk9:A, 3hk9:B, 3hk9:C, 3hk9:D, 3hk9:E, 3hk9:F, 3hk9:G, 3hk9:I, 3hk9:H, 3hk9:J, 3hk9:L, 3hk9:K, 3hka:A, 3hka:C, 3hka:B, 2q08:A, 2q08:B, 2q08:C, 2q08:D, 2q08:E, 2q08:F, 2q08:G, 2q08:H, 2q08:I, 2q08:J, 2q08:K, 2q08:L, 2q6e:A, 2q6e:B, 2q6e:C, 2qee:A, 2qee:B, 2qee:C, 2qee:D, 2qee:F, 2qee:G, 2qee:H, 2qee:I, 2qee:J, 2qee:K, 2qee:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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