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BioLiP
>protein
FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTC
T

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c6e:C 81 81 1.0000 1.0000 1.0000 1.12e-57 5u4w:B, 5u4w:D, 5u4w:F
2 7qrf:D 80 70 0.2716 0.2750 0.3143 8.02e-09
3 5npi:B 233 35 0.1481 0.0515 0.3429 1.6 5npi:A, 5npj:A, 5npj:B
4 5j67:C 563 49 0.2222 0.0320 0.3673 3.1 5j67:A, 5j68:A
5 6b5n:H 222 35 0.1852 0.0676 0.4286 5.5 6b5l:H, 6b5m:H, 6b5o:H, 7rd3:A, 7rd3:H, 7sg5:H, 7sg6:H
6 8qa8:B 202 69 0.2099 0.0842 0.2464 6.4 8qa8:A, 8qa8:C, 8qa8:D, 8qa8:E, 8qa8:F, 1r71:A, 1r71:B, 1r71:C, 1r71:D
7 4d62:A 138 13 0.0988 0.0580 0.6154 7.0 4d63:A
8 4g0a:A 312 38 0.1605 0.0417 0.3421 8.0 6cy9:A, 4g0a:B, 4g0a:C, 4g0a:D, 2r7p:A, 2r8f:A
9 2q6f:B 295 27 0.1358 0.0373 0.4074 8.5 2q6f:A
10 7e0l:A 491 26 0.1358 0.0224 0.4231 9.6 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
11 3ngj:D 222 40 0.1235 0.0450 0.2500 10.0 3ngj:A, 3ngj:B, 3ngj:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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