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BioLiP
>protein
FEVSDGEPYPLNPAVIFIALIGWSAVAAIPSNIPVLGGTGLTQAFLASIQRLLAQYPTGPKLDDPFWFYLIVYHVGLFAL
LIFGQIGYAGYAKGTYN

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fos:O 98 93 0.9588 0.9490 1.0000 8.08e-63 7blz:O, 8wey:O, 5zgb:O, 5zgh:O
2 7y5e:ON 92 88 0.4948 0.5217 0.5455 3.25e-30 7y5e:O2, 7y7a:O7, 7y7a:Oo
3 7y7b:O 99 92 0.4845 0.4747 0.5109 8.36e-28 7y8a:O
4 8wm6:O 104 93 0.4845 0.4519 0.5054 1.64e-25 8wmv:O, 8wmw:O
5 8htu:O 90 84 0.4330 0.4667 0.5000 1.77e-21 7ksq:O, 7ku5:O, 7xqp:O
6 8wgh:O 89 82 0.3918 0.4270 0.4634 8.98e-20
7 7dz7:O 97 85 0.4124 0.4124 0.4706 2.28e-17 7d0j:O, 7dz8:O
8 8j6z:O 86 79 0.3711 0.4186 0.4557 7.18e-17
9 6sl5:O 86 85 0.3608 0.4070 0.4118 8.55e-17
10 7yca:O 96 95 0.3711 0.3750 0.3789 7.49e-16
11 6zzx:O 87 85 0.3608 0.4023 0.4118 2.42e-13
12 5zji:O 76 80 0.2784 0.3553 0.3375 4.89e-09
13 2c8s:A 149 63 0.1959 0.1275 0.3016 1.2
14 7nvh:A 717 42 0.1443 0.0195 0.3333 2.4
15 6nb3:A 1169 45 0.1856 0.0154 0.4000 2.4 5gmq:A, 6j11:A, 6j11:B, 6j11:C, 7m5e:C, 7m5e:E, 7m5e:A, 6nb4:A, 6pxh:A, 6pxh:B, 6q04:C, 6q04:A, 6q04:B, 6q05:C, 6q05:A, 6q05:B, 6q06:C, 6q06:A, 6q06:B, 6q07:C, 6q07:A, 6q07:B, 7ymt:B, 7ymt:C, 7ymv:A, 7ymv:B, 7ymy:B, 7ymz:B, 7yn0:A, 7yn0:B, 7yn0:C
16 1ncy:A 162 27 0.1031 0.0617 0.3704 2.8 1a2x:A, 1avs:A, 1avs:B, 1cta:A, 1cta:B, 1ctd:A, 1ctd:B, 1jc2:A, 1npq:A, 1smg:A, 1tnq:A, 4tnc:A, 5tnc:A, 1top:A, 2w49:0, 2w49:3, 2w49:6, 2w49:9, 1ytz:C, 1yv0:C
17 7cnp:A 559 42 0.1443 0.0250 0.3333 3.5 7cnp:B, 7cnp:C, 7cnq:A, 7cnq:B, 7cnq:C, 7cnq:D, 7d2r:A
18 1tn4:A 157 27 0.1031 0.0637 0.3704 6.9 1tcf:A, 2tn4:A
19 3zzm:A 520 33 0.1134 0.0212 0.3333 8.2 4a1o:A, 4a1o:B
20 4eog:A 466 56 0.1856 0.0386 0.3214 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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