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BioLiP
>protein
FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ag2:J 58 56 1.0000 0.9655 1.0000 4.38e-38 3ag2:W, 5b1a:J, 5b1a:W, 5b1b:J, 5b1b:W, 5b3s:J, 5b3s:W, 7coh:J, 7coh:W, 7cp5:J, 7cp5:W, 7d5w:J, 7d5w:W, 7d5x:J, 7d5x:W, 7ev7:J, 7ev7:W, 8gvm:J, 8gvm:W, 8h8r:J, 8h8r:W, 8h8s:J, 8h8s:W, 8ijn:W, 6j8m:J, 6j8m:W, 6juw:J, 6juw:W, 6jy3:J, 6jy4:J, 5luf:7, 6nmf:J, 6nmf:W, 7thu:W, 7tie:J, 7tih:J, 7tih:W, 7tii:W, 7vuw:J, 7vuw:W, 7vvr:J, 7vvr:W, 7w3e:J, 7w3e:W, 5xdq:J, 5xdq:W, 5xdx:J, 5xdx:W, 7xma:J, 7xma:W, 7xmb:J, 7xmb:W, 7y44:J, 7y44:W, 7ypy:J, 7ypy:W, 5z84:J, 5z84:W, 5z85:J, 5z85:W, 5z86:J, 5z86:W, 5zco:J, 5zco:W, 5zcp:J, 5zcp:W, 5zcq:J, 5zcq:W
2 7f79:C 458 27 0.2143 0.0262 0.4444 3.0 7f79:A, 7f79:B, 7f79:D, 7f79:E, 7f79:F
3 7t3u:A 2020 24 0.1786 0.0050 0.4167 3.0 7t3u:D
4 8tl9:D 2034 24 0.1786 0.0049 0.4167 3.0 8tla:D
5 8tkd:A 2249 24 0.1786 0.0044 0.4167 3.0 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
6 8tk8:A 2268 24 0.1786 0.0044 0.4167 3.0 8tk8:B, 8tk8:C, 8tk8:D, 8tkh:A, 8tkh:B, 8tkh:C, 8tkh:D, 8tki:A, 8tki:B, 8tki:C, 8tki:D, 8tl9:C, 8tla:C
7 8tkf:A 2272 24 0.1786 0.0044 0.4167 3.0 8tkf:D, 8tkf:B, 8tkf:C
8 3t7v:A 337 27 0.1786 0.0297 0.3704 3.2
9 7t3p:A 2066 25 0.1786 0.0048 0.4000 4.9 7t3p:B, 7t3p:C, 7t3p:D
10 7t3q:A 2103 25 0.1786 0.0048 0.4000 5.3 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
11 7t3r:A 2130 25 0.1786 0.0047 0.4000 5.4 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
12 6dr0:C 2193 25 0.1786 0.0046 0.4000 5.4 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
13 6uqk:A 2054 25 0.1786 0.0049 0.4000 5.4 6uqk:B, 6uqk:C, 6uqk:D
14 1um4:L 219 42 0.2143 0.0548 0.2857 5.6 1aj7:L, 1c5c:L, 1gaf:L, 2hh0:L, 5kvl:L, 1um5:L
15 7t1h:A 342 29 0.1786 0.0292 0.3448 6.0 7t1g:A, 7t1h:B, 7t1i:A, 6uj5:A
16 5v4v:A 397 18 0.1607 0.0227 0.5000 6.1 5v4p:A, 5v4p:B, 5v4v:B
17 4eoy:A 124 31 0.2143 0.0968 0.3871 6.1 4eoy:B, 4eoy:C
18 7t1i:B 314 29 0.1786 0.0318 0.3448 6.2 7t1g:B
19 9awk:A 402 42 0.3036 0.0423 0.4048 6.8 9avu:A, 9avu:C, 9avv:C, 9awj:A, 9awj:C, 9awk:C
20 6wv7:B 388 49 0.3214 0.0464 0.3673 8.5 6wv3:A, 6wv4:A, 6wv5:A, 6wv6:A, 6wv7:A, 6wvh:A, 6wvh:B
21 7sz8:A 420 19 0.1429 0.0190 0.4211 9.1 7sz8:B
22 1cf8:L 215 11 0.1250 0.0326 0.6364 9.1 6jwc:L
23 6lu4:A 481 25 0.1429 0.0166 0.3200 9.4 6lu3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417