Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFA
SLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWG
GYVLYPQVMEFWQGQTNRLHDWIVFRRGLPTPLGPMTHRGEEDWLYERLAP

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nrg:A 213 213 0.9905 0.9812 0.9812 9.18e-156 6h00:A, 3hy8:A, 8qyt:A, 8qyw:A
2 1jnw:A 214 202 0.3886 0.3832 0.4059 3.38e-45 1dnl:A, 1g76:A, 1g77:A, 1g78:A, 1g79:A, 6ylz:AAA, 6ymh:BBB
3 1ci0:A 205 215 0.3934 0.4049 0.3860 2.81e-41 1ci0:B
4 1t9m:A 204 187 0.2796 0.2892 0.3155 1.39e-27 1t9m:B
5 4hmw:B 205 178 0.2749 0.2829 0.3258 2.23e-25 4hmw:A, 4hmx:A, 4hmx:B
6 4hmt:B 207 187 0.2701 0.2754 0.3048 1.23e-24 4hms:A, 4hms:B, 4hmt:A, 4hmu:A, 4hmu:B, 4hmv:A, 4hmv:B, 1ty9:A, 1ty9:B
7 1wv4:A 162 202 0.2796 0.3642 0.2921 1.45e-20 1wv4:B, 6ymh:AAA
8 2i51:A 194 79 0.1043 0.1134 0.2785 1.07e-05 2i51:B
9 6s6b:K 1024 111 0.1280 0.0264 0.2432 1.3 6s8b:K, 6s8e:K, 6s91:K, 6sh8:K, 6shb:K, 6sic:K
10 7d0j:6 230 92 0.0948 0.0870 0.2174 6.7 7bgi:6, 7blx:6, 7dz7:6, 7dz8:6, 8h2u:6, 6ijj:6, 6ijo:6, 6jo5:6, 6jo6:6, 7r3k:6, 7wyi:6, 7wzn:6, 7zq9:6, 7zqc:6, 7zqd:6, 7zqd:62
11 5itd:A 995 31 0.0427 0.0090 0.2903 7.4 5dxh:A, 8ilr:A, 8ils:A, 8ilv:A, 7k6m:A, 7k6o:A, 7r9v:A, 7r9y:A, 8sbc:A, 8sbj:A, 8twy:A, 7tz7:A, 5xgj:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218