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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSP
LTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMG
GMIVRIGEKYVDMSAKTKIQKLSRAMR

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z1u:S 187 187 1.0000 1.0000 1.0000 3.53e-136 2jmx:A
2 6tmi:G 180 170 0.3262 0.3389 0.3588 6.55e-29
3 7nkl:d 327 176 0.2567 0.1468 0.2727 3.92e-09
4 2a7u:B 105 94 0.1283 0.2286 0.2553 0.005
5 8d8j:d 660 101 0.1658 0.0470 0.3069 0.80 8d8k:d
6 7vzg:a 858 67 0.1230 0.0268 0.3433 2.4 7vzg:A, 7vzr:A, 7vzr:a
7 8oul:A 185 51 0.0749 0.0757 0.2745 2.7 8ouk:A, 8oul:B, 8oul:C
8 2uvh:A 404 109 0.1176 0.0545 0.2018 3.7 2uvi:A, 2uvj:A
9 4ryv:A 155 82 0.1176 0.1419 0.2683 5.3
10 2iop:A 618 112 0.1711 0.0518 0.2857 7.0 2iop:B, 2iop:C, 2iop:D, 2ior:A, 1y4s:A, 1y4s:B
11 2r79:A 279 136 0.1658 0.1111 0.2279 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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