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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKL
VSYRKAMYHALEKARVRAGKTFPDSLEDQLKPMLEWAHGGFKPTGIEGLKP

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5nrr:B 137 135 1.0000 0.9562 0.9704 1.41e-92 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
2 5ciu:B 121 131 0.9160 0.9917 0.9160 8.51e-81
3 9exy:B 135 51 0.1603 0.1556 0.4118 1.50e-05 6ue6:C, 6ue6:F
4 9exw:A 148 52 0.1374 0.1216 0.3462 5.02e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
5 6g2b:A 123 23 0.0992 0.1057 0.5652 5.00e-04 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
6 6kcp:B 84 65 0.1298 0.2024 0.2615 0.004 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
7 5xsk:A 90 23 0.0916 0.1333 0.5217 0.020
8 6iit:B 100 23 0.0840 0.1100 0.4783 0.10 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
9 8cbn:L 86 23 0.0840 0.1279 0.4783 0.12 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
10 3qj6:A 90 21 0.0840 0.1222 0.5238 0.34 3qby:B
11 4n4g:A 209 19 0.0840 0.0526 0.5789 0.34 4n4h:A, 4n4i:A, 4ns5:A
12 8t8a:A 583 93 0.1985 0.0446 0.2796 0.59 8jt7:A, 8t8a:B, 8t8a:C, 8t8a:D
13 3mo8:A 127 21 0.0687 0.0709 0.4286 0.67 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 5b73:A 313 14 0.0763 0.0319 0.7143 1.0 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
15 5j6f:A 352 71 0.1374 0.0511 0.2535 1.2 5j6f:B
16 6h2j:B 990 43 0.0992 0.0131 0.3023 1.3 4be7:B, 4be7:D, 4beb:A, 4beb:B, 4beb:C, 4beb:D, 4bec:A, 4bec:B, 6h2j:A, 2w00:A, 2w00:B, 4xjx:A, 4xjx:B
17 3kn5:B 289 61 0.1450 0.0657 0.3115 1.7 3kn5:A, 7up4:A, 7up4:B, 7up5:A, 7up5:B, 7up6:A, 7up7:A, 7up7:B, 7up8:A, 7up8:B
18 8qlg:A 624 63 0.1756 0.0369 0.3651 4.5 8qlg:B
19 7jil:u 85 34 0.0916 0.1412 0.3529 5.1
20 3x1l:A 573 28 0.0916 0.0209 0.4286 5.8
21 2hd0:G 127 38 0.0687 0.0709 0.2368 6.6
22 1lj8:A 492 41 0.1069 0.0285 0.3415 6.8 1m2w:A, 1m2w:B
23 6pwu:A 615 19 0.0611 0.0130 0.4211 6.9 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
24 5jwa:A 495 70 0.1450 0.0384 0.2714 7.2 5jwa:H, 5jwb:A, 5jwb:H, 5jwc:A, 5jwc:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218