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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGKTVACDAYRYRHKPQQEAGRPPTVPVVYIRPHQ
KCGPKDLFKKITEYLKYRVTKGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDIAEDLGIAVVLVGTDRLDA
VIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVLKLPVSSNLKSKEMLRILTSATEGYIGRLDEILREAAIRSLSR
GLKKIDKAVLQEVAKEY

The query sequence (length=257) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bd4:F 260 257 1.0000 0.9885 1.0000 0.0 8bd4:G, 8bd4:A, 8bd4:B, 8bd4:C, 8bd4:D, 8bd4:E, 8bd5:H, 8bd5:I, 8bd5:E, 8bd5:F, 8bd5:G, 8bd5:J, 8bd5:K, 8bd6:R, 8bd6:X, 8bd6:S, 8bd6:T, 8bd6:U, 8bd6:V, 8bd6:W, 8bd6:Y, 8bd6:Z, 8ea3:A, 8ea3:B, 8ea3:C, 8ea3:K, 8ea3:J, 8ea3:L, 8ea3:H, 8ea3:E, 8ea3:D, 8ea3:F, 8ea3:G, 8ea3:I, 8ea4:E, 8ea4:C, 8ea4:D, 8ea4:B, 8ea4:M, 8ea4:I, 8ea4:A, 8ea4:F, 8ea4:G, 8ea4:H, 8ea4:J, 8ea4:K, 8ea4:L, 7m99:F, 7m99:A, 7m99:B, 7m99:C, 7m99:D, 7m99:E, 7m99:G, 7m99:H, 7m9a:H, 7m9a:I, 7m9a:J, 7m9a:K, 7m9a:B, 7m9a:C, 7m9a:D, 7m9a:E, 7m9a:F, 7m9a:L, 7m9b:H, 7m9b:I, 7m9b:J, 7m9b:K, 7m9b:B, 7m9b:C, 7m9b:D, 7m9b:E, 7m9b:F, 7m9b:L, 7m9c:I, 7m9c:J, 7m9c:B, 7m9c:C, 7m9c:D, 7m9c:E, 7m9c:F, 7m9c:H, 7m9c:K, 7m9c:L, 7n6i:D, 7n6i:E, 7n6i:F, 7n6i:G, 7n6i:H, 7n6i:I, 7n6i:J, 7plh:G, 7plh:A, 7plh:B, 7plh:C, 7plh:D, 7plh:E, 7plh:F, 8rdu:G, 8rdu:H, 8rdu:D, 8rdu:I, 8rdu:M, 8rdu:N, 8rdu:O, 8rdu:P, 8rdu:E, 8rdu:J, 8rdu:F, 8rdu:K, 8rdu:L, 8rdu:Q, 8rku:H, 8rku:I, 8rku:M, 8rku:N, 8rku:O, 8rku:P, 8rku:D, 8rku:E, 8rku:F, 8rku:G, 8rku:J, 8rku:K, 8rku:L, 8rku:Q, 7svu:B, 7svu:J, 7svu:A, 7svu:C, 7svu:D, 7svu:E, 7svu:F, 7svu:H, 7svu:K, 7svu:G, 7svu:I, 7svv:A, 7svv:G, 7svv:B, 7svv:H, 7svv:C, 7svv:I, 7svv:D, 7svv:J, 7svv:E, 7svv:F
2 7rzy:1 311 255 0.1984 0.1640 0.2000 2.06e-04 7rzy:2, 7rzy:7, 7rzy:3, 7rzy:4, 7rzy:5, 7rzy:6, 7ufi:1, 7ufi:7, 7ufi:2, 7ufi:3, 7ufi:4, 7ufi:5, 7ufi:6, 7ufm:D, 7ufm:I, 7ufm:A, 7ufm:B, 7ufm:C, 7ufm:E, 7ufm:F, 7ufm:G, 7ufm:H, 7ufm:J, 7ufm:K, 7ufm:L, 7ufm:M, 7ufm:N
3 8xvb:C 246 100 0.1089 0.1138 0.2800 0.019 8xvb:D, 8xvb:F, 8xvb:G, 8xvb:H, 8xvb:A, 8xvb:B, 8xvb:E, 8xvc:A, 8xvc:B, 8xvc:C, 8xvc:D, 8xvc:E, 8xvc:F, 8xvc:G, 8xvc:H, 8xvc:I, 8xvc:J, 8xvc:K, 8xvc:L, 8xvc:M, 8xvc:N, 8xvc:O, 8xvc:P, 8xvc:Q, 8xvc:R, 8xvd:A, 8xvd:B, 8xvd:C, 8xvd:D, 8xvd:E, 8xvd:F, 8xvd:G, 8xvd:H, 8xvd:I, 8xvd:J, 8xvd:K, 8xvd:L, 8xvd:M, 8xvd:N, 8xvd:O, 8xvd:P, 8xvd:Q, 8xvd:R, 8xvd:S, 8xvd:T
4 8bns:A 433 138 0.1128 0.0670 0.2101 0.64 8bns:B, 8bns:C, 8bns:D
5 2y6s:C 217 38 0.0545 0.0645 0.3684 1.1 5eoc:L, 5eoc:M, 2gsi:C, 2gsi:G, 2gsi:A, 2gsi:E, 3pho:A, 2y6s:L
6 1i7z:A 219 45 0.0545 0.0639 0.3111 1.5 1i7z:C, 7o30:L, 7o30:A, 7o31:L
7 6kth:A 190 90 0.0856 0.1158 0.2444 1.9
8 2pl3:A 232 48 0.0623 0.0690 0.3333 4.2
9 6xyw:AM 82 44 0.0545 0.1707 0.3182 6.0
10 7q4q:A 218 37 0.0428 0.0505 0.2973 7.7 7q4q:C, 7sgm:L, 7sgm:M, 7sgm:Y, 6w9g:L, 6w9g:M, 6w9g:Y
11 4h8v:A 557 54 0.0584 0.0269 0.2778 10.0 4gi6:A, 4gi6:B, 4gi8:A, 4gi8:B, 4gi9:A, 4gi9:B, 4gia:A, 4gia:B, 4gin:A, 4go8:A, 4go8:B, 4go9:A, 4go9:B, 4h2c:A, 4h7v:A, 4h7v:B, 4h8h:A, 4h8h:B, 4h8u:A, 4h8u:B, 4h8v:B, 4ha1:A, 4ha1:B, 2pwd:A, 2pwd:B, 2pwe:A, 2pwe:B, 2pwf:A, 2pwf:B, 2pwf:C, 2pwf:D, 2pwg:A, 2pwg:B, 2pwh:A, 2pwh:B, 1zja:A, 1zja:B, 1zjb:A, 1zjb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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