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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIG
EMSFLQHNKCECRPKKD

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1kat:V 99 97 1.0000 0.9798 1.0000 2.67e-69 6d3o:A, 6d3o:B, 4glu:D, 1kat:W, 4kzn:A, 3qtk:A, 3qtk:D, 3qtk:F, 6v7k:B, 1vpp:V, 1vpp:W, 6z13:W, 6z3f:W, 6zbr:W, 6zcd:W
2 4hqu:A 95 63 0.1856 0.1895 0.2857 2.90e-05 4hqx:A
3 5hb0:D 502 33 0.1237 0.0239 0.3636 1.6
4 7tbj:A2 1269 33 0.1237 0.0095 0.3636 1.7 7tbj:A4, 7tbk:A2, 7tbk:A4, 7tbl:A2, 7tbl:A4, 7tbm:A2, 7tbm:A4
5 7tbj:A5 1276 33 0.1237 0.0094 0.3636 1.7 5hax:A, 5hb0:B, 5hb0:C, 5hb0:A, 7tbi:A1, 7tbi:A2, 7tbi:A3, 7tbi:A4, 7tbj:A1, 7tbj:A3, 7tbj:A6, 7tbk:A1, 7tbk:A3, 7tbk:A5, 7tbk:A6, 7tbl:A1, 7tbl:A3, 7tbl:A5, 7tbl:A6, 7tbm:A1, 7tbm:A3, 7tbm:A5, 7tbm:A6
6 6awr:A 156 66 0.1649 0.1026 0.2424 2.4 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
7 7pkt:r 158 32 0.1031 0.0633 0.3125 2.7
8 7tbu:A 450 60 0.1856 0.0400 0.3000 2.9 7tbu:B
9 5ech:A 569 35 0.1134 0.0193 0.3143 6.0 5ech:D, 5eci:A, 5eci:D, 5eck:A, 5eck:D, 5ecl:A, 5ecl:D, 5ecm:A, 5ecm:D, 5ecn:A, 5ecn:D, 5eco:A, 5eco:D, 5ecp:A, 5ecp:D, 5ecq:A, 5ecq:D, 5ecr:A, 5ecr:D, 4epl:A, 5gzz:A
10 3feu:A 183 45 0.1443 0.0765 0.3111 6.6
11 5k1b:A 264 34 0.1134 0.0417 0.3235 8.5
12 8g04:B 398 43 0.1237 0.0302 0.2791 8.5 8g04:C
13 8hy9:A 159 38 0.1237 0.0755 0.3158 8.7
14 5lva:A 174 15 0.1031 0.0575 0.6667 9.8 5lva:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218