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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVVIPKKKTWDKVAVLQALASTVHRDTTAAPYAFQDDPYLIPTSSVESHSFLLAKKSGENAAKFIINSYPKYFQKDIAEP
HIPCLMPEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASLATYHHIIQLFYAAAAAA
AAAAAAAAMFFQSAMRVCSSLRDLELAYQVHGLLNTGDNRKFIGPDPRRNFYYSKFFSLLCLMEQIDVTLKWYKDLIPSV
FFPHSQTLIDLLQALDVANRLEMIPQIWKDSKEYGHTFRSDLKEEILMLMARDQHPPELQAAFADCAADIKSEWPANSLN
YIAILFLRAGRTQEAWKMLGLFRKHNKIPRNELLNEFMDSAKASSSPAQAVEVVKLANSFS

The query sequence (length=461) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3jd5:o 461 461 1.0000 1.0000 1.0000 0.0
2 6gaw:Ao 572 271 0.4425 0.3566 0.7528 8.19e-153 6gaz:Ao
3 6gaw:Ao 572 88 0.1844 0.1486 0.9659 3.00e-55 6gaz:Ao
4 8any:A4 595 290 0.4273 0.3311 0.6793 1.27e-140 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
5 8any:A4 595 135 0.1844 0.1429 0.6296 4.32e-51 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
6 7pnt:4 589 272 0.3948 0.3090 0.6691 3.82e-129 7pnu:4, 7pnv:4, 7pnw:4
7 7pnt:4 589 129 0.1822 0.1426 0.6512 1.29e-49 7pnu:4, 7pnv:4, 7pnw:4
8 5aj3:o 476 248 0.1844 0.1786 0.3427 5.12e-91 5aj3:e, 5aj4:Ae, 5aj4:Bz, 5aj4:Ao, 5apn:z, 5apo:z, 4ce4:x, 4ce4:z, 5flc:C, 5flc:G, 6hiv:UD, 6hix:UD, 6sg9:Ui, 6sgb:UO, 6sgb:Ui, 7z34:oC
9 1qjs:A 408 74 0.0434 0.0490 0.2703 4.3 1qhu:A, 1qjs:B
10 5ds0:C 359 26 0.0260 0.0334 0.4615 4.8 5ds0:A, 5ds0:B, 5ds0:D, 5ds0:E, 5ds0:F, 5ds0:G, 5ds0:H, 5ds0:I, 5ds0:J, 5ds0:K, 5ds0:L
11 7c9r:Q 78 53 0.0369 0.2179 0.3208 5.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218