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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVLTGGHSVSAPQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSD
VVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN
RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL
LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLT
LDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV

The query sequence (length=357) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2agw:B 361 357 1.0000 0.9889 1.0000 0.0 2agw:A, 2agx:B, 2agx:A, 2agy:B, 2agz:B, 2agz:A, 2ah0:B, 2ah0:A, 2hj4:B, 2hj4:A, 2hjb:B, 2hjb:A, 2hkr:B, 2hkr:A, 2iuq:A, 2iuq:B, 2oiz:A, 2ojy:A, 2q7q:B, 2q7q:A
2 2ovq:B 444 133 0.0924 0.0743 0.2481 0.35 2ovr:B, 7t1y:B, 7t1z:B, 5v4b:B
3 3rhh:D 480 73 0.0616 0.0458 0.3014 0.62 3rhh:A, 3rhh:B, 3rhh:C
4 3a31:A 465 152 0.1008 0.0774 0.2368 1.7 3a32:A
5 2wb9:A 210 43 0.0476 0.0810 0.3953 2.0 2wb9:B, 2wdu:A, 2wdu:B
6 2q3o:B 367 87 0.0588 0.0572 0.2414 2.1 2g5w:A, 2g5w:B, 2q3o:A, 1q45:A, 1q45:B
7 6wnx:A 410 53 0.0420 0.0366 0.2830 4.7 6m90:A, 6m91:A, 6m92:A, 6m93:A, 6m94:A, 1p22:A, 6ttu:T, 6wnx:D, 6wnx:G
8 8c01:o 314 117 0.0728 0.0828 0.2222 5.2
9 6rxu:CW 382 51 0.0420 0.0393 0.2941 5.8 6rxv:CW, 6rxx:CW, 6rxz:CW
10 7aoe:A 1401 70 0.0532 0.0136 0.2714 6.5 7aoc:A, 7aod:A, 7aod:M
11 4d5e:B 587 151 0.1036 0.0630 0.2450 9.6 4d5e:A, 4d5g:A, 4d5g:B, 2pgn:A, 2pgn:B, 2pgo:A, 2pgo:B
12 7w15:A 294 32 0.0280 0.0340 0.3125 10.0 7w15:B, 7w19:A, 7w19:B, 7w1a:B, 7w1a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218