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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTLQLEDIIKQRIR
DQAWDDVVRKEKPKEDAYEYKKRLTLDHESLAEIYEQEYIKLNQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPK
PPVPEIKVVSNLPAITMEEVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKL
LISVHKLKL

The query sequence (length=249) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mqa:NA 295 247 0.9357 0.7898 0.9433 1.18e-162 7mq8:NA, 7mq9:NA
2 7aju:CK 222 206 0.3373 0.3784 0.4078 4.20e-40 7d4i:5E, 7d5t:5E, 5wxm:V, 6zqd:CK, 6zqe:CK, 6zqf:CK, 6zqg:CK
3 7ajt:CK 207 206 0.3052 0.3671 0.3689 4.80e-35 7d5s:5E, 7d63:5E, 6ke6:5E, 6lqp:5E, 6lqq:5E, 6lqr:5E, 6lqs:5E, 6lqt:5E, 6lqu:5E, 6lqv:5E, 7suk:NA, 5wlc:NA, 6zqa:CK, 6zqb:CK, 6zqc:CK
4 6rxt:CL 231 204 0.2811 0.3030 0.3431 6.57e-33 6rxu:CL, 6rxv:CL, 6rxx:CL, 6rxy:CL, 6rxz:CL
5 5oql:c 175 151 0.2088 0.2971 0.3444 3.62e-21
6 5vyz:A 1144 57 0.0683 0.0149 0.2982 1.2 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
7 4umk:D 176 54 0.0643 0.0909 0.2963 4.2 4umk:A
8 6wjp:A 80 51 0.0562 0.1750 0.2745 5.3 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
9 3bg5:A 1137 122 0.1245 0.0273 0.2541 6.1 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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