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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNRDE
LIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLIQTIPTERAQRLIQEE
MEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVEPRINLPH
LLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHL

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j7x:A 276 276 1.0000 1.0000 1.0000 0.0
2 3pz2:A 298 199 0.1957 0.1812 0.2714 4.84e-09
3 1d8d:A 323 199 0.1703 0.1455 0.2362 7.83e-08 2bed:A, 1d8e:A, 3dpy:A, 3e33:A, 3e34:A, 3e37:A, 3eu5:A, 2f0y:A, 1fpp:A, 4gtr:A, 2h6f:A, 2h6g:A, 2h6h:A, 2h6i:A, 2iej:A, 1jcq:A, 1jcr:A, 1jcs:A, 3ksl:A, 1ld7:A, 1ld8:A, 1mzc:A, 1n4r:A, 1n4r:C, 1n4r:G, 1n94:A, 1ni1:A, 1o1r:A, 1o1t:A, 1o5m:A, 1qbq:A, 7rni:A, 1s63:A, 1sa4:A, 1sa5:A, 1tn6:A, 1tn7:A, 1tnb:A, 1tnb:E, 1tnb:G, 1tnb:C, 1tnb:I, 1tnb:K, 1tno:A, 1tno:C, 1tno:E, 1tno:G, 1tno:I, 1tno:K, 1tnu:A, 1tnu:C, 1tnu:E, 1tnu:G, 1tnu:I, 1tnu:K, 1tny:A, 1tny:C, 1tny:E, 1tny:G, 1tny:I, 1tny:K, 1tnz:C, 1tnz:I, 1tnz:A, 1tnz:E, 1tnz:K, 2zir:A, 2zis:A
4 6pk6:A 338 160 0.1123 0.0917 0.1938 0.075 4ifc:A, 4ifc:B, 4iir:A, 4iir:B, 4ijp:A, 4ijp:B, 6pjj:A, 6pjj:B, 6pjj:C, 6pjj:D, 6qx9:K
5 4l9p:A 335 204 0.1594 0.1313 0.2157 0.17
6 7t0e:A 318 110 0.0942 0.0818 0.2364 0.24 3q73:A, 3q75:A, 3q78:A, 3q7a:A, 3q7f:A, 3sfy:A, 8t70:A
7 1mxd:A 435 31 0.0399 0.0253 0.3548 1.4 1mwo:A, 1mxg:A
8 7pua:Cg 487 68 0.0725 0.0411 0.2941 2.3 6hiv:Cg, 6hiw:Cg, 6hiz:Cg, 7pub:Cg, 6sg9:Cg, 6sgb:Cg
9 1sks:A 681 107 0.0725 0.0294 0.1869 4.1 1skr:A, 1skw:A, 1sl1:A, 1sl2:A, 1t7p:A, 1tk5:A, 1x9m:A, 1x9s:A, 1x9w:A, 1zyq:A
10 3ht2:A 143 66 0.0761 0.1469 0.3182 5.4 3ht2:C
11 8euh:A 418 33 0.0471 0.0311 0.3939 6.6 1cpt:A, 8euk:A, 8eul:A
12 3qgv:A 435 28 0.0362 0.0230 0.3571 7.1
13 5wqg:A 140 58 0.0652 0.1286 0.3103 9.0 5wqf:A, 5wqf:C, 5wqg:B, 5wqg:C, 5wqg:D, 5wqg:F, 5wqh:A, 5wqh:B, 5wqh:C, 5wqh:D, 5wqh:E, 5wqh:F, 5wqi:A, 5wqi:B, 5wqi:C, 5wqi:D, 5wqi:E, 5wqi:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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