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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ETLKSANELLDSLEHSHRVDLSLHLYSAYLLKRLLYKANEKKHFYEVNQFVKTQIKDNWTSWPNPNTIIDPSVDKLYEDI
PVQPGEISNRALMHASDMMRVELDAQWQKFLSKSALDHDVTLDVDELNIPNEISRNILVKLDSLFEGLHDKIAKENEFDV
RQDKHSNKYTYHDLVSRGCEMNEDMTDIYMKSLELYNDIPEKYKKRKFRLPKQILKKYHQPKKTSSYLKELLSKTREDFI
PVEKLLKDKRLTSKDKSKLQRLNREETEDALNKRTFFQVKGYLEDENEISDYELDDCLIEL

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7z0o:E 301 301 1.0000 1.0000 1.0000 0.0
2 6pbc:A 1070 57 0.0598 0.0168 0.3158 0.52
3 7t8t:A 1086 54 0.0565 0.0157 0.3148 1.1
4 7z3j:A 1119 54 0.0565 0.0152 0.3148 1.1 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
5 5xwm:D 368 110 0.0764 0.0625 0.2091 2.0 5xwm:A, 5xwm:C, 5xwm:B
6 6kuj:B 705 59 0.0598 0.0255 0.3051 3.3 6kuk:B, 6kup:B, 6kur:B, 6kut:B, 6kuu:B, 6kuv:B
7 4hea:3 756 46 0.0498 0.0198 0.3261 4.0 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
8 8in8:C 470 42 0.0532 0.0340 0.3810 8.0 8jl0:B, 8k87:A, 8k87:F, 8k88:A
9 5ah0:B 387 54 0.0498 0.0388 0.2778 8.5 5ah0:A
10 2i6h:B 176 29 0.0266 0.0455 0.2759 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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