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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ESNGDVFETGTAEMYILSEGLFNQNNSSLARYSFNRQRCTNNYFSANNQRGLGDTANDIAIYGNKIYVVVNVSSTVEVID
FPTGKSIRQISMLRDNGSSRQPRAIAFDKDKAYICSYDGTVARIDTTSLEIEEIVTVGRNAEDICVQNGKLYVSNSGGLD
YSGPGVDTTVSVIDITTFKETKKIEVGPNPGKILPGLEEAVYVVTRGTDIEAGDYHLVKIDSRTDAVAITYDEKVLSFAI
DGPIAYLYTYDYQTKDSANKVFDLNAGTVIRDNFITDGTAIQTPFSIQLNPFSGNIYITEAYNYTVKGDVLCFNQQGQLQ
YRLNDIGLNPNTVVFSDKASQN

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8blw:B 626 342 0.9942 0.5431 0.9942 0.0 8ptd:A, 8ptf:A
2 8p97:B 335 327 0.2135 0.2179 0.2232 2.01e-08 8okv:B, 8okv:A, 8okv:C, 8okv:D, 8p98:B, 8puj:A
3 8bn0:A 342 335 0.2310 0.2310 0.2358 7.49e-08 8bai:A, 8bai:B, 8bai:C, 8bai:D, 8baz:A, 8baz:B, 8bb0:A, 8bb0:B, 8bmy:A, 8bmy:B, 8bmz:A, 8bmz:B
4 6ke6:5C 535 61 0.0497 0.0318 0.2787 1.9 7ajt:UG, 7aju:UG, 7d4i:5C, 7d5s:5C, 7d5t:5C, 7d63:5C, 6lqp:5C, 6lqq:5C, 6lqr:5C, 6lqs:5C, 6lqt:5C, 6lqu:5C, 6lqv:5C, 6nd4:W, 7suk:LW, 5wlc:LW, 6zqa:UG, 6zqb:UG, 6zqc:UG, 6zqd:UG
5 4v4n:AV 66 51 0.0497 0.2576 0.3333 2.1 6skf:BY, 6skg:BY, 6th6:BY, 4v6u:BV
6 4qww:D 225 32 0.0409 0.0622 0.4375 2.6 4qww:F, 3sge:H, 3sge:J
7 6fy0:H 226 67 0.0526 0.0796 0.2687 2.6 6fy0:I, 6fy2:H, 6fy2:X
8 6cmk:A 375 93 0.0731 0.0667 0.2688 3.2 6cmk:B
9 3d9d:A 432 59 0.0585 0.0463 0.3390 6.4 2c0u:A, 2c0u:B, 2c0u:C, 2c0u:D, 2c12:A, 2c12:B, 2c12:C, 2c12:D, 2c12:E, 2c12:F, 3d9d:B, 3d9d:C, 3d9d:D, 3d9e:A, 3d9e:B, 3d9e:C, 3d9e:D, 3d9f:A, 3d9f:B, 3d9f:C, 3d9f:D, 3d9g:A, 3d9g:B, 3d9g:C, 3d9g:D, 3fcj:A, 3fcj:B, 3fcj:C, 3fcj:D, 2reh:A, 2reh:B, 2reh:C, 2reh:D, 2zaf:A, 2zaf:B, 2zaf:C, 2zaf:D
10 8ouw:5 541 27 0.0351 0.0222 0.4444 7.1
11 3moj:B 75 42 0.0439 0.2000 0.3571 7.6
12 5dgr:A 573 49 0.0439 0.0262 0.3061 7.7 5dgr:B
13 3vcr:A 216 73 0.0556 0.0880 0.2603 8.4 3vcr:B
14 7aih:BL 309 46 0.0409 0.0453 0.3043 8.5 7ane:BL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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