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BioLiP
>protein
ESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINAELGI

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2l7p:A 100 60 0.9833 0.5900 0.9833 1.42e-38 5yvx:A
2 6qxz:A 79 60 0.9833 0.7468 0.9833 1.70e-38
3 5ix1:A 414 53 0.3333 0.0483 0.3774 8.50e-09
4 6o1e:A 431 48 0.3000 0.0418 0.3750 4.82e-08 5ix1:B, 5ix2:A, 5ix2:B, 4qq4:A, 4qq4:B, 5svi:A, 5svi:B, 5svx:A, 5svy:A
5 7k7t:A 390 48 0.3167 0.0487 0.3958 8.66e-08 7k7t:B
6 6o5w:A 57 48 0.3000 0.3158 0.3750 1.63e-07
7 4o62:B 57 48 0.2833 0.2982 0.3542 1.29e-06 4o62:A, 4o62:C, 4z0o:A, 4z0r:B, 4z0r:A, 4z0r:C
8 5ofb:B 541 44 0.2167 0.0240 0.2955 0.025 5of9:A, 5of9:B, 5ofa:B, 5ofa:A, 5ofb:A
9 4x2h:A 192 30 0.1500 0.0469 0.3000 3.5 4x2o:A
10 2bwr:A 401 28 0.2000 0.0299 0.4286 3.9 2bwm:A, 2bwr:B, 2c25:A, 2c25:B, 2c4d:A, 4up4:A, 4up4:B
11 2k16:A 75 38 0.1833 0.1467 0.2895 5.2 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
12 6nrz:A 517 31 0.1667 0.0193 0.3226 6.8 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
13 4i6n:A 219 32 0.1833 0.0502 0.3438 7.3 4i6n:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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