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BioLiP
>protein
ERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKVSTGSS
ARHN

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nm7:A 84 84 1.0000 1.0000 1.0000 2.00e-56 3n8b:A, 3n8b:B
2 5yfb:A 691 55 0.2024 0.0246 0.3091 1.9 5yfb:B, 5yfd:A, 5yfd:B
3 5n6n:C 698 41 0.1786 0.0215 0.3659 2.6 5m4a:A
4 5fgp:A 144 61 0.2024 0.1181 0.2787 5.5
5 1tah:B 318 35 0.1310 0.0346 0.3143 8.1 1cvl:A, 2es4:A, 2es4:B, 1qge:E, 1tah:A, 1tah:C, 1tah:D
6 7blz:B 731 56 0.2024 0.0233 0.3036 9.9 6fos:B, 8wey:B, 5zgb:B, 5zgh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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