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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK
RERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLYDETKYVFEELEQTLKHLIE

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hli:A 146 139 1.0000 0.9178 0.9640 7.53e-95 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
2 1z9c:C 138 126 0.3881 0.3768 0.4127 2.77e-26 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
3 3hsr:B 133 124 0.3134 0.3158 0.3387 1.49e-14 3hsr:A, 3hsr:C, 3hsr:D
4 5x80:A 137 99 0.1940 0.1898 0.2626 1.75e-06 5hso:A, 5hso:C, 5hso:D, 5hso:B, 5x7z:A, 5x80:B
5 5h3r:A 141 127 0.2687 0.2553 0.2835 1.95e-06 5h3r:B
6 3zpl:E 160 118 0.2239 0.1875 0.2542 4.80e-06 3zpl:A, 3zpl:B, 3zpl:F
7 7kfq:A 141 127 0.2313 0.2199 0.2441 6.42e-06 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
8 4em0:B 150 102 0.2164 0.1933 0.2843 1.39e-05
9 2fbh:A 137 114 0.2313 0.2263 0.2719 1.88e-04
10 6c2s:A 142 69 0.1866 0.1761 0.3623 5.09e-04 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
11 5aip:A 141 104 0.2164 0.2057 0.2788 6.67e-04 5aip:B
12 3ech:B 135 76 0.2015 0.2000 0.3553 0.002 3ech:A
13 4fx4:B 133 98 0.1940 0.1955 0.2653 0.003 4fx4:A
14 6pcp:A 140 78 0.1119 0.1071 0.1923 0.003 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F
15 2frh:A 127 78 0.1567 0.1654 0.2692 0.008 2frh:B
16 5cyv:B 143 102 0.1791 0.1678 0.2353 0.031 5cyv:A, 3fm5:C
17 6jbx:A 146 50 0.1119 0.1027 0.3000 0.084 6jbx:B
18 4rgu:B 144 92 0.1194 0.1111 0.1739 0.19 5bmz:A, 5bmz:B, 5bmz:C, 5bmz:D, 4rgs:A, 4rgs:B, 4rgu:A
19 6fi9:A 144 67 0.1418 0.1319 0.2836 0.26 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
20 5yhx:N 146 59 0.1269 0.1164 0.2881 0.27 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
21 3q5f:A 141 84 0.1418 0.1348 0.2262 0.36 3q5f:B
22 4aij:B 142 97 0.1716 0.1620 0.2371 0.51 4aij:A, 4aik:A
23 7el3:A 138 76 0.1194 0.1159 0.2105 0.60 7el3:B
24 7dvr:A 147 44 0.0970 0.0884 0.2955 0.83 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
25 3gfi:A 143 133 0.2015 0.1888 0.2030 0.88 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
26 7uci:A 686 41 0.0970 0.0190 0.3171 3.8 7uci:B
27 7ucl:A 616 41 0.0970 0.0211 0.3171 4.0 7ucl:B
28 4jxy:A 311 51 0.1119 0.0482 0.2941 4.3
29 5odc:A 653 49 0.1194 0.0245 0.3265 5.1 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
30 4dr0:B 291 55 0.1269 0.0584 0.3091 7.3 4dr0:A
31 3kya:A 471 38 0.0896 0.0255 0.3158 7.4
32 6o5c:A 215 44 0.0597 0.0372 0.1818 8.5 6o5c:B
33 3irm:A 520 24 0.0821 0.0212 0.4583 9.3 3cl9:A, 3clb:A, 3clb:B, 3clb:C, 3clb:D, 2h2q:A, 2h2q:B, 3hbb:A, 3hbb:B, 3hbb:C, 3hbb:D, 3inv:A, 3inv:B, 3irm:B, 3irm:C, 3irm:D, 3irn:A, 3irn:B, 3irn:C, 3irn:D, 3iro:A, 3iro:B, 3iro:C, 3iro:D, 3kjs:A, 3kjs:B, 3kjs:C, 3kjs:D, 5t7o:A, 5t7o:B, 5t7o:C, 5t7o:D
34 2pk0:A 247 43 0.1045 0.0567 0.3256 9.7 2pk0:B, 2pk0:C, 2pk0:D
35 2xfg:A 446 28 0.0821 0.0247 0.3929 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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