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BioLiP
>protein
EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCSPDHNCQSNCKD

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wp4:A 43 43 1.0000 1.0000 1.0000 2.86e-26
2 4aml:A 171 30 0.5349 0.1345 0.7667 8.52e-10 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
3 4aml:A 171 33 0.4419 0.1111 0.5758 5.23e-06 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
4 4aml:A 171 31 0.4186 0.1053 0.5806 1.30e-05 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
5 4aml:A 171 38 0.4651 0.1170 0.5263 4.48e-05 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
6 1uha:A 82 40 0.5581 0.2927 0.6000 3.36e-09
7 1uha:A 82 40 0.4651 0.2439 0.5000 1.25e-07
8 6sto:A 165 39 0.4884 0.1273 0.5385 1.42e-06 6sto:B, 6stp:A, 6stp:B
9 6sto:A 165 32 0.4419 0.1152 0.5938 6.42e-06 6sto:B, 6stp:A, 6stp:B
10 6sto:A 165 24 0.3721 0.0970 0.6667 2.82e-05 6sto:B, 6stp:A, 6stp:B
11 6sto:A 165 39 0.4419 0.1152 0.4872 0.002 6sto:B, 6stp:A, 6stp:B
12 6lnr:A 292 32 0.4186 0.0616 0.5625 2.11e-04
13 4z8i:A 224 16 0.2093 0.0402 0.5625 0.45
14 4qi7:A 805 30 0.2093 0.0112 0.3000 2.2 4qi7:B
15 1bru:P 241 28 0.2558 0.0456 0.3929 5.6
16 8f0p:A 1116 26 0.2093 0.0081 0.3462 6.4 8f0q:A, 8f0r:A, 8f0s:A
17 6a91:A 1323 26 0.2093 0.0068 0.3462 6.4 6a95:A, 6nt3:A, 6nt4:A
18 9cer:P 609 28 0.2326 0.0164 0.3571 8.2 9ces:P, 9cet:P
19 7vfs:A 1266 23 0.1860 0.0063 0.3478 8.8 7vfu:A, 7vfv:A, 7vfw:A
20 7mix:A 1326 23 0.1860 0.0060 0.3478 8.8 7miy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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