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BioLiP
>protein
EPVKDTNGNPLKIETRYFIQPASGGGLVPANVDLSHLCPLGIVRTSLPYQPGLPVTISTPNDVLTNTNIAITFDAPIWPC
PSSKTWTVDSSSEEKYIITGGDPKSGESFFRIEKYGNGKNTYKLVRYGKSVGSTKSLWGPALVLNDDDDSDENAFPIKFR
EVD

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dre:C 177 175 0.9939 0.9153 0.9257 1.26e-110 2dre:A, 2dre:B, 2dre:D, 6giw:A, 6giw:B, 6giw:C, 6giw:D, 6gix:A, 6gix:B, 6gix:C, 6gix:D, 6s2y:A, 6s2y:B, 6s2y:D, 6s2y:C
2 5hpz:A 175 178 0.4724 0.4400 0.4326 6.95e-36 5hpz:B, 6s2z:A
3 8wfo:B 191 134 0.2331 0.1990 0.2836 3.50e-04 8wfo:A
4 6ntt:B 176 132 0.2270 0.2102 0.2803 0.015 6ntt:A
5 8vql:A 325 61 0.1227 0.0615 0.3279 0.029 1rvx:A, 1rvx:C, 1rvx:E, 1rvx:G, 1rvx:I, 1rvx:K, 1rvz:A, 1rvz:C, 1rvz:E, 1rvz:G, 1rvz:I, 1rvz:K, 8sd2:A, 8sd4:A, 8vqm:A, 8vqn:A, 8vqq:A, 5w5s:A, 5w5u:A, 5w6i:A, 5w6r:A, 5w6r:C, 5w6r:E, 5w6r:G, 5w6t:A, 5w6u:A, 6wcr:A
6 4wbc:A 179 130 0.2209 0.2011 0.2769 0.12
7 6n41:A 483 58 0.1043 0.0352 0.2931 1.8 6cf7:B, 7jpd:D, 8sd2:B, 8sd4:B, 7uyi:E, 8vql:B, 8vqm:B, 8vqn:B, 8vqq:B, 5w5s:B, 5w5u:B, 5w6i:B, 5w6r:B, 5w6r:D, 5w6r:F, 5w6r:H, 5w6t:B, 5w6u:B, 6wcr:B, 2wrg:M
8 6cf7:A 322 60 0.1043 0.0528 0.2833 1.9 6lks:A, 6lks:K, 6lks:G, 6lks:I
9 6i52:B 132 38 0.0736 0.0909 0.3158 2.3
10 2dcn:A 308 103 0.1411 0.0747 0.2233 3.5 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
11 7uac:H 546 44 0.0920 0.0275 0.3409 3.6 7uab:E, 7uab:H, 7uae:A, 7uaf:B, 7uaf:A, 7uaf:C, 7uaf:D, 7uai:E, 7uai:B, 7uai:C, 7uai:D
12 8i9r:Cg 233 52 0.0982 0.0687 0.3077 4.0 8i9t:Cg
13 6c0f:A 394 49 0.1043 0.0431 0.3469 4.7 6cb1:A, 6em1:5, 6em3:5, 6em4:5, 7ohs:5, 7ohw:5, 7ohx:5, 8v83:I, 8v84:I, 5z3g:V
14 3nix:A 407 32 0.0675 0.0270 0.3438 5.5 3nix:B, 3nix:C, 3nix:D, 3nix:E, 3nix:F, 3nix:G, 3nix:H
15 5db4:B 175 73 0.1288 0.1200 0.2877 7.0
16 1rv0:L 324 59 0.1043 0.0525 0.2881 7.8 1rvt:H, 1rvt:J, 1rvt:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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