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BioLiP
>protein
EPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1weu:A 91 51 0.9216 0.5165 0.9216 7.59e-32 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
2 1wes:A 71 48 0.7843 0.5634 0.8333 3.36e-27 2g6q:A
3 2qic:A 51 51 0.7843 0.7843 0.7843 1.84e-26
4 1x4i:A 70 46 0.6667 0.4857 0.7391 2.08e-24 7zmx:A, 7zmx:B
5 2jmi:A 60 51 0.5686 0.4833 0.5686 1.14e-18 2jmj:A
6 2mum:A 50 48 0.5294 0.5400 0.5625 2.54e-17
7 4gnd:C 107 34 0.3333 0.1589 0.5000 9.89e-06 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
8 2naa:A 94 34 0.2941 0.1596 0.4412 2.42e-05
9 6j2p:A 98 52 0.4118 0.2143 0.4038 3.85e-05 6j2p:B, 6j2p:D, 6j2p:C
10 2k16:A 75 39 0.3137 0.2133 0.4103 4.25e-04 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
11 2miq:A 94 52 0.4118 0.2234 0.4038 0.001
12 2l5u:A 61 41 0.3529 0.2951 0.4390 0.002
13 2puy:B 60 38 0.3137 0.2667 0.4211 0.002 2puy:A
14 9c0o:A 63 55 0.3529 0.2857 0.3273 0.003
15 2yql:A 56 41 0.3137 0.2857 0.3902 0.004
16 5b73:A 313 21 0.2157 0.0351 0.5238 0.004 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
17 2ke1:A 66 40 0.3529 0.2727 0.4500 0.021 2kft:A, 1xwh:A
18 6q3m:C 219 39 0.3137 0.0731 0.4103 0.11 6q3m:A, 6q3m:B
19 6guu:B 204 39 0.3137 0.0784 0.4103 0.15 6guu:A
20 6ryr:W 708 39 0.3137 0.0226 0.4103 0.15 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
21 7mju:A 184 34 0.2353 0.0652 0.3529 0.16 5dag:A, 5dah:B, 5dah:A
22 8bpb:C 126 39 0.2941 0.1190 0.3846 0.21 8bpc:C
23 5vab:A 54 42 0.2941 0.2778 0.3571 0.26
24 6fhq:A 58 17 0.1765 0.1552 0.5294 0.29 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
25 8bpa:C 213 38 0.2941 0.0704 0.3947 0.32 8c60:C
26 1mm3:A 61 39 0.3137 0.2623 0.4103 0.66
27 5wlf:A 60 56 0.3922 0.3333 0.3571 0.84 5wle:A
28 7klo:A 59 17 0.1961 0.1695 0.5882 0.87 7klr:A
29 6oie:B 111 48 0.3137 0.1441 0.3333 1.0 6oie:A, 5u2j:B, 5u2j:A
30 4lk9:A 126 48 0.3333 0.1349 0.3542 1.2 5b75:A, 5b76:A, 5b77:A, 5b78:A, 4ljn:A, 4lka:A, 4llb:A, 4llb:B, 2ln0:A, 6lsb:A, 3v43:A
31 1ydn:A 283 16 0.1765 0.0318 0.5625 1.9 1ydn:B, 1ydn:C, 1ydn:D
32 6ieu:A 170 38 0.3137 0.0941 0.4211 2.1 6iet:A
33 7yi0:F 120 40 0.3137 0.1333 0.4000 2.3
34 8w9c:F 156 40 0.3137 0.1026 0.4000 2.8 8hxx:P, 8hy0:P, 8jho:P, 8w9d:F, 8w9e:F, 8w9f:F
35 1wem:A 76 55 0.3529 0.2368 0.3273 2.9 4l7x:A, 2m3h:A
36 8ihn:M 357 40 0.3137 0.0448 0.4000 3.1 8kd4:E
37 7yi2:D 321 40 0.3137 0.0498 0.4000 3.2 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
38 8kd6:E 301 40 0.3137 0.0532 0.4000 3.2 8kd2:E
39 3n9m:A 503 37 0.3137 0.0318 0.4324 3.3 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
40 6u04:A 168 24 0.1765 0.0536 0.3750 3.4 5erc:A
41 8hxx:N 375 40 0.3137 0.0427 0.4000 3.5 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
42 2mny:A 55 17 0.1569 0.1455 0.4706 4.4 2mnz:A
43 1tz3:A 299 14 0.1373 0.0234 0.5000 4.8 1tz6:A, 1tz6:B
44 9atn:A 98 23 0.1961 0.1020 0.4348 5.6
45 5ijl:A 943 20 0.1569 0.0085 0.4000 5.7
46 8ppt:B 1191 20 0.1569 0.0067 0.4000 5.7 8ppu:B, 8ppv:B, 6t8h:B
47 8ge0:A 188 36 0.2745 0.0745 0.3889 7.4 8gdx:A, 8ge0:B, 8ge0:C
48 5z0f:A 279 22 0.1765 0.0323 0.4091 7.5 2ahk:A, 2ahl:A, 3aws:A, 3awt:A, 3awu:A, 3awv:A, 3aww:A, 3awx:A, 3awy:A, 3awz:A, 3ax0:A, 7cit:A, 7ciy:A, 1wx2:A, 1wx4:A, 5z0d:A, 5z0e:A, 5z0g:A, 5z0h:A, 5z0i:A, 5z0j:A, 5z0k:A, 5z0l:A, 5z0m:A, 2zmx:A, 2zmy:A, 2zmz:A, 2zwd:A, 2zwe:A, 2zwf:A, 2zwg:A
49 3o36:A 184 38 0.2941 0.0815 0.3947 8.0 7b9x:A, 5h1t:A, 5h1t:B, 5h1t:C, 5h1t:D, 5h1u:B, 5h1u:A, 5h1u:C, 5h1u:D, 5h1v:A, 5h1v:B, 3o33:A, 3o33:B, 3o33:C, 3o33:D, 3o34:A, 3o35:B, 3o35:A, 3o36:B, 3o37:A, 3o37:B, 3o37:C, 3o37:D, 4yab:A, 4yab:B, 4yad:A, 4yad:B, 4yat:A, 4yat:B, 4yax:A, 4yax:B, 4ybm:A, 4ybm:B, 4ybs:A, 4ybt:A, 4yc9:A, 4zql:A, 4zql:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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