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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPRGVVRITCPVALLQATVSTMLADFMASCPLVTIHLEATNRQVDPVAEAIDIAIRVRPPPLQNSDLVLRVLGNRCQCLV
ASPELIGRQGEVNTPVDLTGWPSLGLGQPQQTFIWNLEGPEKAHAAVYHQPRLVTADMNTLRSAALAGVGVVQLPLMMVT
EQLAEGTLVRLLPDWSVRHEIIHAVYPSRRGLLPSVRSVLDYLVQRFSQLDER

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7trw:A 213 213 1.0000 1.0000 1.0000 1.02e-155
2 4wkm:A 197 149 0.1878 0.2030 0.2685 7.01e-08 4wkm:B, 4wkm:C, 4wkm:D, 4wkm:E, 4wkm:F, 4wkm:G, 4wkm:H
3 8h5a:F 204 56 0.1033 0.1078 0.3929 5.24e-04 8h5a:A, 8h5a:B, 8h5a:C, 8h5a:D, 8h5a:E, 8h5a:G, 8h5a:H, 8h5a:I, 8h5a:J, 8h5a:K, 8h5a:L, 8h5a:M, 8h5a:N, 8h5a:O, 8h5a:P
4 8ro0:E 312 109 0.1268 0.0865 0.2477 0.067 8ro1:E
5 3fd3:A 207 97 0.1362 0.1401 0.2990 0.31
6 1jmx:B 339 87 0.0939 0.0590 0.2299 0.64 1jmz:B
7 4v8p:BI 198 51 0.0845 0.0909 0.3529 0.95 4v8p:CI, 4v8p:EI, 4v8p:GI
8 6evj:C 748 66 0.0751 0.0214 0.2424 2.8 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C
9 5z49:B 220 73 0.0939 0.0909 0.2740 3.3 5z49:A
10 6rw7:A 208 104 0.1268 0.1298 0.2596 3.6
11 3fxx:A 288 58 0.0845 0.0625 0.3103 6.3 3dzq:A, 3fy2:A, 4g2f:A, 4gk2:A, 4gk3:A, 4gk4:A, 6in0:A, 4p4c:A, 4p5q:A, 4p5z:A, 2qo7:A, 2qo9:A, 2qoc:A, 2qoq:A, 4twn:A, 4two:A
12 3qnm:A 231 29 0.0469 0.0433 0.3448 7.5
13 5ydv:A 209 51 0.0610 0.0622 0.2549 7.7
14 5awh:A 759 25 0.0563 0.0158 0.4800 8.0 6d8a:A, 6d8a:F, 6d8f:A, 6d8f:F, 6d8p:A, 6d8p:B, 6d92:A, 6d92:F, 6d95:A, 6d95:F, 6d9k:A, 6d9k:F, 6d9l:A, 6d9l:F
15 7d54:A 242 36 0.0751 0.0661 0.4444 8.1 7d54:B
16 6p8v:G 320 55 0.0939 0.0625 0.3636 9.2 6p80:A, 6u7b:A, 6u7b:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218