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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENRIQIMSTIAKIYRAMSRELNRRLGELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRD
REDRRAILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVILVLDKISKILKRIEEISQ

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gfi:A 143 141 0.9929 0.9790 0.9929 3.96e-97 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
2 5e1z:B 169 125 0.2128 0.1775 0.2400 4.82e-10 5e1x:A, 5e20:A
3 3q5f:A 141 135 0.2553 0.2553 0.2667 5.84e-09 3q5f:B
4 4xrf:A 142 84 0.2057 0.2042 0.3452 3.01e-08
5 4aij:B 142 132 0.2411 0.2394 0.2576 6.75e-08 4aij:A, 4aik:A
6 2fbh:A 137 132 0.3262 0.3358 0.3485 2.71e-07
7 1z9c:C 138 92 0.1773 0.1812 0.2717 5.06e-07 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
8 5hli:A 146 133 0.1844 0.1781 0.1955 1.29e-06 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
9 4rgu:B 144 141 0.2340 0.2292 0.2340 9.38e-06 5bmz:A, 5bmz:B, 5bmz:C, 5bmz:D, 4rgs:A, 4rgs:B, 4rgu:A
10 6jbx:A 146 93 0.1560 0.1507 0.2366 1.29e-05 6jbx:B
11 7kfq:A 141 68 0.1702 0.1702 0.3529 3.80e-04 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
12 5yhx:N 146 84 0.1773 0.1712 0.2976 6.72e-04 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
13 5cyv:B 143 36 0.1489 0.1469 0.5833 7.14e-04 5cyv:A, 3fm5:C
14 4fx4:B 133 111 0.2199 0.2331 0.2793 0.001 4fx4:A
15 5aip:A 141 72 0.1348 0.1348 0.2639 0.001 5aip:B
16 5h3r:A 141 106 0.2128 0.2128 0.2830 0.001 5h3r:B
17 7kua:A 149 114 0.1986 0.1879 0.2456 0.005
18 7el3:A 138 86 0.1702 0.1739 0.2791 0.006 7el3:B
19 6c2s:A 142 72 0.1489 0.1479 0.2917 0.012 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
20 4em0:B 150 135 0.2340 0.2200 0.2444 0.012
21 6fi9:A 144 77 0.1418 0.1389 0.2597 0.023 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
22 3hsr:B 133 98 0.2199 0.2331 0.3163 0.067 3hsr:A, 3hsr:C, 3hsr:D
23 3zpl:E 160 88 0.1560 0.1375 0.2500 1.4 3zpl:A, 3zpl:B, 3zpl:F
24 8y6u:H 92 93 0.1844 0.2826 0.2796 2.4 8y6u:J
25 7smg:B 144 44 0.1277 0.1250 0.4091 2.7 7smg:A, 7smg:C, 7smg:D
26 6eri:BM 111 25 0.0780 0.0991 0.4400 3.7 5mmj:m, 5mmm:m
27 7tzc:A 4404 46 0.1135 0.0036 0.3478 4.1 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
28 2vbw:A 147 41 0.1064 0.1020 0.3659 4.2 2vbx:A, 2vby:A, 2vbz:A, 2vc0:A, 2vc1:A, 2w24:A
29 5dte:B 287 46 0.0922 0.0453 0.2826 5.4 5dte:A, 5dte:C, 5dte:D
30 8uhe:J 167 150 0.2553 0.2156 0.2400 6.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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