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BioLiP
>protein
EMAAALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRN

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o2f:B 77 77 1.0000 1.0000 1.0000 1.10e-50
2 7xya:C 1190 28 0.1818 0.0118 0.5000 0.20 7xyb:C
3 7f0r:C 1324 28 0.1818 0.0106 0.5000 0.21
4 8h97:A 619 34 0.1948 0.0242 0.4412 0.51
5 7wiv:A 571 31 0.1558 0.0210 0.3871 0.76 7wiw:A, 7wix:A
6 5eer:A 247 21 0.1299 0.0405 0.4762 3.1 5ees:A
7 1j1v:A 94 27 0.1558 0.1277 0.4444 3.6
8 6wmp:C 1196 28 0.1429 0.0092 0.3929 3.8 6wmr:C, 6wmt:C
9 6j9f:C 1296 28 0.1429 0.0085 0.3929 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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