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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELVQQRTQGLLEKVINERLVALARAQVSQIQRELEYPLTVVHGLANSTRLLGEPGADGMPQLNASRDEISALLRSTVQNN
PKLLDTFMAWEPNAFDTDAAFAGQPGKGYGPDGRYLPWWYRGADGKPIVEAMADSIDSEKLLPTGVRENEFYACPKENKR
PCIIDPAPYEMGGKTVMMSSFNVPIMVGDQFRGAVGADLSLAFIQDLLKRADQQLYDGAGEMALIASNGRLVAYTRDDSK
LGEPAGSVLDGNEVDNLKNLTVDQPLYDIDAEHGHIELFLPFTIADSGVRWTLMLQIPQAAVFGELQQLQGELSDQ

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7prq:B 316 316 1.0000 1.0000 1.0000 0.0 7prq:A, 7prr:A, 7prr:B
2 6f9g:D 262 286 0.2373 0.2863 0.2622 6.45e-31 6f9g:A, 6f9g:B, 6f9g:C, 6f9g:E
3 6fu4:A 297 298 0.2342 0.2492 0.2483 2.62e-30 6fu4:B, 6fu4:C, 6fu4:D
4 6d8v:A 269 233 0.1519 0.1784 0.2060 9.84e-07
5 4bed:B 1734 103 0.0886 0.0161 0.2718 0.25 4bed:D, 3qjo:A, 3qjo:B
6 3t2d:A 390 102 0.0886 0.0718 0.2745 0.81 3t2b:A, 3t2c:A, 3t2e:A, 3t2f:A, 3t2g:A
7 7rf9:A 381 70 0.0696 0.0577 0.3143 3.3 7rf9:B, 7rf9:C, 7rf9:D, 7rgb:A, 7rgb:B, 7rgb:C, 7rgb:D
8 7tfh:B 320 41 0.0538 0.0531 0.4146 4.8 8dqw:B, 8dqx:B, 8dqz:B, 8dr0:B, 8dr1:B, 8dr3:B, 8dr4:B, 8dr5:B, 8dr6:B, 8dr7:B, 8fs3:B, 8fs4:B, 8fs5:B, 8fs6:B, 8fs7:B, 8fs8:B, 7sgz:B, 7sh2:B, 7st9:B, 7stb:B, 7ste:B, 1sxj:B, 7tfi:B, 7tfj:B, 7tfk:B, 7tfl:B, 7thj:B, 7thv:B, 8thb:B, 8thc:B, 8thd:B, 7ti8:B, 7tib:B, 7tic:B, 7tid:B, 7tku:B, 8tw7:4, 8tw8:4, 8twa:4, 8twb:4, 7u19:B, 7u1a:B, 7u1p:B
9 7jrj:I 327 95 0.0823 0.0795 0.2737 5.0
10 5b4t:A 260 83 0.0728 0.0885 0.2771 5.8 5b4u:A, 5b4v:A, 3vdq:A, 3vdq:B, 3vdq:C, 3vdq:D, 3vdr:A, 3vdr:B, 3vdr:C, 3vdr:D, 3w8d:A, 3w8e:A, 3w8f:A
11 5ltx:A 243 67 0.0475 0.0617 0.2239 9.8 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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