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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELNAVDAKLTTDFGQKIDLNNSDIRDFRGLRGFYPNLASEIIKNAPYDTVEEVLDIPGLSETQKSRLEANLGSFTVTEPS
IELTSGDDRINPGVY

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7n8o:U 95 95 1.0000 1.0000 1.0000 1.60e-65 7n8o:u, 7rcv:U, 7rcv:u, 8tow:U, 8tow:u
2 8wql:UD 95 95 0.5579 0.5579 0.5579 4.43e-32 8wql:UE, 8wql:U1, 8wql:u1, 8wql:uD, 8wql:uE
3 3l7m:D 412 51 0.1368 0.0316 0.2549 1.2 3l7k:A, 3l7k:D, 3l7k:C, 3l7l:D, 3l7m:A, 3l7m:B, 3l7m:C
4 3swj:A 246 63 0.2105 0.0813 0.3175 1.5
5 3wqo:A 271 38 0.1474 0.0517 0.3684 2.1 3wqo:B
6 1b90:A 516 69 0.2105 0.0388 0.2899 3.5 1b9z:A, 5bca:A, 5bca:B, 5bca:C, 5bca:D, 1itc:A, 1j0y:A, 1j0y:B, 1j0y:C, 1j0y:D, 1j0z:A, 1j0z:B, 1j0z:C, 1j0z:D, 1j10:A, 1j10:B, 1j10:C, 1j10:D, 1j11:A, 1j11:B, 1j11:C, 1j11:D, 1j12:A, 1j12:B, 1j12:C, 1j12:D, 1j18:A, 1vem:A, 1ven:A, 1veo:A, 1vep:A, 8zrz:A
7 6s0k:h 838 47 0.1579 0.0179 0.3191 5.2 5k9t:A, 2vda:A
8 2fsh:A 691 47 0.1579 0.0217 0.3191 6.8 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
9 2fsh:B 722 47 0.1579 0.0208 0.3191 6.9
10 2fsi:B 748 47 0.1579 0.0201 0.3191 7.2 2fsg:B
11 7oln:AAA 134 28 0.1368 0.0970 0.4643 7.7 8bro:A, 7olu:AAA, 7olw:AAA, 6tid:AAA, 6tig:AAA, 6tig:CCC, 6tig:BBB, 2wq4:A, 2wq4:C, 2wq4:B, 6zzw:A, 6zzw:C, 6zzw:B
12 1zzh:B 308 30 0.1158 0.0357 0.3667 8.0 1zzh:A, 1zzh:C, 1zzh:D
13 8i23:C 1164 25 0.1158 0.0095 0.4400 8.5 8i24:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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