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BioLiP
>protein
ELLHPLPVRARKMEWLKRDAVEENEEILRRPYYTIKSYALPPAVGRQESIHNSNNIRGGMHSSHSLDLIMRQPRRVKTPE
QLRALRDRLRFIGVTGPMPQATSVSTKSYTDTYGSRLRPRYPESWDTVPPHQPSRELL

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aoi:At 145 138 1.0000 0.9517 1.0000 3.50e-99 6hiv:At, 6hix:At, 6yxx:At, 6yxy:At
2 7am2:Af 145 137 0.5362 0.5103 0.5401 1.16e-42 7aih:Af, 7ane:Af
3 7rhw:A 437 60 0.1087 0.0343 0.2500 0.86 7rhv:A, 7rhv:B, 7rhw:B, 7ri0:A, 7ri0:B
4 7vrd:A 439 61 0.1159 0.0364 0.2623 1.0 7vrd:B, 7vrd:C, 7vrd:D
5 7mq8:LH 746 44 0.1232 0.0228 0.3864 1.0 7mq9:LH, 7mqa:LH
6 3ozb:A 241 45 0.1232 0.0705 0.3778 2.7 3ozb:B, 3ozb:C, 3ozb:D, 3ozb:E, 3ozb:F
7 3vuf:A 488 27 0.0725 0.0205 0.3704 3.1
8 6a9t:A 417 93 0.1667 0.0552 0.2473 3.7 6a9u:A, 6a9v:A
9 5vyj:A 918 25 0.0725 0.0109 0.4000 3.9 1jqo:A, 1jqo:B, 6mgi:A, 6mgi:B, 5vyj:B, 5vyj:C, 5vyj:D
10 8iuf:4F 75 43 0.0942 0.1733 0.3023 4.4 8iuj:4F, 8iuj:4f

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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