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BioLiP
>protein
EKYCCEEASEKKCCPAGCKGDCKCANCHCAEQKQCGDKTHQHQG

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8aq9:A 44 44 1.0000 1.0000 1.0000 2.27e-24
2 8ap5:A 63 31 0.5000 0.3492 0.7097 1.70e-07
3 6fb3:A 1836 20 0.2045 0.0049 0.4500 5.5 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
4 1k4y:A 501 25 0.2273 0.0200 0.4000 6.2
5 1q90:A 292 25 0.2045 0.0308 0.3600 7.0 1cfm:A, 1cfm:B, 1cfm:C, 1e2v:A, 1e2v:B, 1e2v:C, 1e2w:A, 1e2w:B, 1e2z:A, 1e2z:B, 1e2z:C, 1ewh:A, 1ewh:B, 1ewh:C
6 7lz3:B 339 18 0.2273 0.0295 0.5556 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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