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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIP
WVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ysx:G 155 153 1.0000 0.9871 1.0000 1.96e-110 5c2t:C, 5c2t:G, 5c3j:C, 5c3j:G, 3vr8:C, 3vr8:G, 3vr9:C, 3vr9:G, 3vra:C, 3vra:G, 3vrb:C, 3vrb:G, 4ysx:C, 4ysy:C, 4ysy:G, 4ysz:C, 4ysz:G, 4yt0:C, 4yt0:G, 4ytm:C, 4ytm:G, 4ytn:C, 4ytn:G
2 3sfe:C 139 118 0.2680 0.2950 0.3475 3.59e-19 3abv:C, 3ae1:C, 3ae2:C, 3ae3:C, 3ae4:C, 3ae5:C, 3ae6:C, 3ae7:C, 3ae8:C, 3ae9:C, 3aea:C, 3aeb:C, 3aec:C, 3aed:C, 3aee:C, 3aef:C, 3aeg:C, 8gs8:C, 3sfd:C, 4ytp:C, 4yxd:C, 1zoy:C, 1zp0:C
3 2wqy:C 140 118 0.2484 0.2714 0.3220 5.19e-17 2fbw:C, 2fbw:P, 2h88:C, 2h88:P, 2h89:C, 6myo:C, 6myp:C, 6myq:C, 6myr:C, 6mys:C, 6myt:C, 6myu:C, 2wqy:P, 1yq3:C, 1yq4:C
4 6lum:G 123 97 0.1895 0.2358 0.2990 0.095 6lum:C, 6lum:M
5 7b5f:G 133 86 0.1438 0.1654 0.2558 0.11
6 7zg8:AAA 525 78 0.1569 0.0457 0.3077 2.8 7zg8:BBB
7 7cy6:A 872 31 0.0784 0.0138 0.3871 3.8 1a7l:A, 1a7l:B, 1a7l:C, 1anf:A, 5b3w:A, 5b3w:B, 5b3x:A, 5b3y:A, 7bg0:A, 7bg0:E, 5bjz:B, 5bjz:A, 5bk2:B, 5bk2:A, 5bmy:A, 7cy4:A, 7cy5:A, 7cy7:A, 7cy8:A, 6dks:D, 6dks:H, 1dmb:A, 5e24:A, 5e24:C, 5e7u:A, 6eqz:A, 6eqz:B, 6eqz:D, 6eqz:G, 8etb:A, 1ez9:A, 1ez9:B, 4fe8:B, 4feb:B, 4fec:B, 4fed:A, 4fed:B, 4fed:C, 7fft:A, 7ffw:A, 1fqa:A, 1fqb:A, 1fqc:A, 1fqd:A, 3g7v:A, 3g7v:B, 3g7v:C, 3g7v:D, 3g7w:A, 4giz:A, 4giz:B, 3hpi:A, 3hpi:B, 3hst:A, 3hst:C, 5i69:A, 3io4:C, 3io6:A, 3io6:C, 3iot:A, 3iou:A, 3iou:B, 3iou:C, 3iov:A, 3iow:C, 1iud:A, 4jbz:A, 4jbz:B, 4jbz:C, 7jhg:M, 7jhh:M, 7jij:M, 7jtr:A, 7jtr:C, 7jtr:E, 7jtr:G, 1jvx:A, 1jvy:A, 1jw5:A, 3jyr:A, 4khz:E, 4kyd:A, 4kyd:B, 4kye:A, 6l0z:A, 6l3e:A, 1lax:A, 1lax:C, 3lbs:A, 3lbs:B, 5ldf:M, 5ldf:N, 5ldf:O, 5ldf:P, 5ldf:Q, 5ldf:R, 5ldf:S, 5ldf:T, 5ldf:U, 5ldf:V, 5ldf:W, 5ldf:X, 6lf3:A, 6lf3:B, 6lf3:C, 6lf3:D, 6lf3:E, 6lf3:F, 1lls:A, 6m4w:A, 6m4w:B, 6m4w:C, 7m74:M, 3mbp:A, 4mbp:A, 1mdp:1, 1mdp:2, 1mdq:A, 5mm3:A, 5mm3:B, 1mpd:A, 7mq6:A, 7mq7:A, 1n3w:A, 6n84:A, 6n85:M, 1nl5:A, 1nmu:A, 1nmu:C, 6ob5:B, 6ob5:A, 2ok2:A, 2ok2:B, 3pgf:A, 3puz:E, 3pv0:E, 3q25:A, 3q26:A, 3q27:A, 3q28:A, 3q29:A, 3q29:C, 6qf7:A, 6qf7:C, 6qug:A, 6qug:B, 6qug:C, 6qug:D, 6qug:E, 6qug:F, 6qug:G, 6qug:H, 6qug:I, 6qug:L, 6qug:J, 6qug:K, 8r2o:A, 4rg5:A, 4rg5:B, 3ser:A, 3ser:C, 3ses:A, 3ses:C, 3set:A, 3set:C, 3seu:A, 3sev:A, 3sev:C, 3sev:E, 3sew:A, 3sex:A, 3sex:C, 3sey:A, 3sey:C, 3sey:E, 6siv:A, 6sja:A, 1t0k:A, 5ttd:B, 6tzc:A, 6usm:A, 2v93:A, 6wgz:A, 4wjv:E, 4wjv:F, 4wjv:G, 4wjv:H, 6xdj:C, 6xdj:D, 7xmn:A, 4xr8:A, 4xr8:B, 8ybe:A, 1ytv:A, 1ytv:B, 5zca:A, 1zjl:A
8 6qio:B 267 62 0.1111 0.0637 0.2742 3.8 5bjt:A, 5bjt:C, 5bjt:E, 6c98:A, 6c98:C, 6c99:A, 6c99:C, 3m17:A, 3m17:C, 3m17:E, 3m17:G, 3m1b:A, 3m1b:C, 5whk:A
9 4rl6:A 414 46 0.0915 0.0338 0.3043 4.9 4rl6:B
10 4mc7:A 363 37 0.0654 0.0275 0.2703 5.3 4k3y:A, 4k3y:B, 4k3y:C, 4k3y:D, 4mc7:B, 4mc7:C, 4mc7:D
11 5ic5:A 166 32 0.0784 0.0723 0.3750 5.7
12 5brj:A 140 32 0.0719 0.0786 0.3438 6.0
13 3bof:A 560 79 0.1634 0.0446 0.3165 7.2 3bof:B, 3bol:A, 3bol:B, 1q8j:A, 1q8j:B
14 6vbg:B 397 65 0.1242 0.0479 0.2923 7.7 6c9w:A, 4oaa:A, 4oaa:B, 6vbg:A, 2y5y:A, 2y5y:B, 4zyr:A, 4zyr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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