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BioLiP
>protein
EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wt7:A 63 63 1.0000 1.0000 1.0000 2.07e-38 1a02:F, 1fos:E, 1fos:G, 1s9k:D
2 5vpe:A 67 54 0.6667 0.6269 0.7778 9.42e-19 5vpe:C, 5vpf:A, 5vpf:C
3 7x5e:B 106 40 0.2857 0.1698 0.4500 0.005 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
4 1t2k:D 61 61 0.3175 0.3279 0.3279 0.030
5 5vpe:D 67 48 0.2698 0.2537 0.3542 0.18 5vpe:B, 5vpf:B, 5vpf:D
6 7mq8:LR 773 35 0.2063 0.0168 0.3714 0.84 7mq9:LR, 7mqa:LR
7 4eot:A 92 46 0.2222 0.1522 0.3043 0.85 4eot:B
8 6pre:A 386 39 0.1746 0.0285 0.2821 1.3 2i58:A, 2i58:B, 6pql:A, 6pql:B, 6pql:C, 6pql:D, 6pre:B, 6pre:C, 6pre:D, 6prg:A, 6prg:B
9 3auy:A 366 44 0.2381 0.0410 0.3409 2.8 3aux:A, 3auy:B, 3av0:B, 5dny:D, 5dny:B, 5f3w:D, 5f3w:B
10 2dq0:A 447 61 0.3016 0.0425 0.3115 3.9 2dq0:B, 2zr2:A, 2zr2:B
11 2ns6:A 183 27 0.1746 0.0601 0.4074 4.1
12 1skn:P 74 23 0.1746 0.1486 0.4783 6.4
13 6imj:A 412 28 0.1746 0.0267 0.3929 7.4 6imj:B, 6imk:A, 6iml:A, 6imn:B, 6imn:A
14 7q1s:E 30 26 0.2063 0.4333 0.5000 8.5 7q1s:M, 7q1s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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