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BioLiP
>protein
EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEAR
SLKAYGEL

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1d7q:A 143 88 1.0000 0.6154 1.0000 2.23e-60 7a09:G, 4kzy:n, 4kzz:n, 8oz0:G, 8p03:j, 8p09:j, 8pj1:q, 8pj2:q, 8pj3:q, 8pj4:q, 8pj5:q, 8pj6:q, 8ppl:Iq, 7qp6:q, 7qp7:q, 7syq:A, 7syr:A, 7sys:A, 7syv:A, 7syw:A, 7syx:A, 7tql:4, 6yal:j, 6yam:j, 6ybw:q, 6zmw:q, 6zp4:G
2 6fyx:i 121 87 0.7045 0.5124 0.7126 1.99e-42 8cah:i, 8cas:A, 6fyy:i, 6gsm:i, 6gsn:i, 3j80:i, 3j81:i, 3jam:i, 3jap:i, 8rw1:i, 8s8d:i, 8s8e:i, 8s8f:i, 8s8g:i, 8s8h:i, 8s8i:i, 8s8j:i, 4uer:0, 6zce:i, 6zu9:A
3 4bts:A0 99 87 0.6932 0.6162 0.7011 3.55e-41 4bts:B0, 4bts:C0, 4bts:D0
4 7ase:w 147 85 0.4432 0.2653 0.4588 1.19e-17
5 5jb3:6 95 83 0.3068 0.2842 0.3253 2.10e-10 5jbh:6, 6sw9:6, 6swc:6, 6swd:6, 7zag:6, 7zah:6, 7zai:6
6 6zxg:j 116 84 0.2614 0.1983 0.2738 6.04e-05 6zxf:j, 6zxh:j
7 1nui:A 242 66 0.1932 0.0702 0.2576 1.0 1nui:B
8 6jmv:A 256 23 0.1250 0.0430 0.4783 1.1 8bst:A, 8bst:B, 8bst:C, 8bst:D, 8bsu:A, 8bsu:D, 8bsu:B, 8bsu:C, 8bsu:E, 8bsu:H, 8bsu:F, 8bsu:G, 4e0w:A, 6f28:A, 6f28:B, 6f29:A, 4g8n:A, 4igr:A, 6jmv:B, 4mh5:A, 5nf6:B, 5nf6:A, 4nwc:A, 4nwd:A, 5o4f:B, 5o4f:A, 3s9e:A, 3s9e:B, 3u92:A, 3u92:B, 3u93:A, 3u93:B, 3u94:A, 3u94:B, 3u94:C, 3u94:D
9 6n9x:B 500 66 0.1932 0.0340 0.2576 1.4 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
10 7kmq:B 754 34 0.1364 0.0159 0.3529 2.2 7kmq:A
11 5lth:A 334 32 0.1364 0.0359 0.3750 3.2 5lte:A, 5lti:A
12 8fac:A 1377 47 0.1477 0.0094 0.2766 4.2 8e04:A
13 8e05:A 1749 47 0.1477 0.0074 0.2766 4.3 8e05:B, 8e06:A
14 8jze:K 177 41 0.1477 0.0734 0.3171 4.3 8jw0:K, 8jzf:K
15 4mf3:A 258 24 0.1136 0.0388 0.4167 9.2 3c31:A, 3c31:B, 3c32:A, 3c32:B, 3c33:A, 3c33:B, 3c34:A, 3c34:B, 3c35:A, 3c35:B, 3c36:A, 3c36:B, 4dld:A, 4dld:B, 4e0x:A, 4e0x:B, 2f34:A, 2f34:B, 2f35:A, 2f35:B, 2f36:A, 2f36:B, 2f36:C, 2f36:D, 3fuz:A, 3fuz:B, 3fv1:A, 3fv1:B, 3fv2:A, 3fv2:B, 3fvg:A, 3fvg:B, 3fvk:A, 3fvk:B, 3fvn:A, 3fvn:B, 3fvo:A, 3fvo:B, 6fz4:A, 3gba:A, 3gba:B, 3gba:C, 3gba:D, 3gbb:A, 3gbb:B, 5m2v:A, 5m2v:B, 4mf3:B, 5mfq:A, 5mfq:B, 5mfv:A, 5mfv:B, 5mfw:A, 5mfw:B, 5neb:B, 5neb:A, 5nf5:B, 5nf5:A, 2ojt:A, 2ojt:B, 2pbw:A, 2pbw:B, 4qf9:A, 4qf9:B, 4qf9:C, 2qs1:A, 2qs1:B, 2qs2:A, 2qs2:B, 2qs3:A, 2qs3:B, 2qs4:A, 2qs4:B, 2qs4:C, 2qs4:D, 8r36:A, 8r36:B, 3s2v:A, 3s2v:B, 6sbt:A, 1txf:A, 1vso:A, 2wky:A, 2wky:B, 1ycj:A, 1ycj:B, 4ymb:A, 4ymb:B, 2zns:A, 2znt:A, 2znu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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