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BioLiP
>protein
EKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERL

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3q6s:B 67 60 0.9836 0.8955 1.0000 2.83e-40 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
2 6hw2:B 69 61 0.8852 0.7826 0.8852 1.12e-36 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
3 8uxq:A 170 58 0.8033 0.2882 0.8448 3.65e-32 3fdt:A
4 8uxq:A 170 44 0.1967 0.0706 0.2727 0.087 3fdt:A
5 3tzd:A 58 44 0.1967 0.2069 0.2727 0.006 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
6 2rvn:A 83 44 0.1967 0.1446 0.2727 0.028
7 1guw:A 73 38 0.1803 0.1507 0.2895 0.045 6d07:A, 6d07:B, 6d08:A, 6d08:B
8 6asz:A 53 44 0.1803 0.2075 0.2500 2.0 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 2jkb:A 661 45 0.2623 0.0242 0.3556 3.0 4fow:A, 4foy:A, 4fp2:A, 4fp3:A, 4fpc:A, 4fpe:A, 4fpf:A, 4fpg:A, 4fph:A, 4fpj:A, 4fpk:A, 4fpl:A, 4fpo:B, 4fpy:A, 4fq4:A, 2vw1:A, 2vw2:A, 4xe9:A, 4xhb:A, 4xhx:A, 4xil:A, 4xj9:A, 4xja:A, 4xju:A, 4xjw:A, 4xma:A, 4xog:A, 4xyx:A
10 8x2i:A 2303 21 0.1311 0.0035 0.3810 3.3
11 8x2h:A 2363 21 0.1311 0.0034 0.3810 3.4 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
12 5jpq:Y 365 27 0.1803 0.0301 0.4074 4.3 5wyj:3F, 5wyk:3F
13 6dwo:A 712 30 0.1967 0.0169 0.4000 4.9 6dwo:B, 6dwo:C, 6dwo:D, 7fe1:A, 7fe1:B, 7fe1:C, 7fe1:D, 7fe2:A, 7fe2:B, 7fe2:C, 7fe2:D
14 3qo2:A 61 48 0.1803 0.1803 0.2292 5.0 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
15 5ucr:A 271 42 0.1967 0.0443 0.2857 5.1 5kwv:A, 5kwv:B, 5ucr:B
16 7aju:CH 467 27 0.1803 0.0236 0.4074 6.5 7ajt:CH, 7d4i:3F, 7d5s:3F, 7d5t:3F, 7d63:3F, 6ke6:3F, 6lqp:3F, 6lqq:3F, 6lqr:3F, 6lqs:3F, 6lqt:3F, 6lqu:3F, 6lqv:3F, 6nd4:g, 7suk:SG, 5wlc:SG, 6zqb:CH, 6zqc:CH, 6zqd:CH, 6zqe:CH
17 7way:A 960 30 0.1639 0.0104 0.3333 8.0 7waz:A, 7wb1:A
18 8y9c:B 1609 21 0.1311 0.0050 0.3810 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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