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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKIINQPQDVVSEMLDGLTYAYGDLIEKVPDFEIIQRKSPKSGKVALVSGGGSGHEPAHAGFVGEGMLSAAVCGAIFTSP
TPDQIYEAIKSADEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVENSLYTQGRRGVAGTVLVHKILG
AAAHQEASLDEIKDLADKVVKNIKTIGLALSAATVPDNEIEYGVGIHSEPGYRREKMKTSYELATELVGKLKEEFKFEAG
QKYGILVNGMGATPLMEQFIFMNDVAKLLTEENIEILFKKVGNYMTSIDMAGLSLTMIKLEDDQWLKNLNEDVKTISW

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ct4:A 318 318 1.0000 1.0000 1.0000 0.0 3ct4:B, 3ct4:C
2 1uod:A 336 319 0.4245 0.4018 0.4232 2.34e-81 3pnq:D, 1uod:B, 1uoe:A, 1uoe:B
3 1un9:A 537 330 0.3774 0.2235 0.3636 1.19e-55 1un9:B
4 4c1t:A 396 90 0.0943 0.0758 0.3333 0.50 4c1u:A, 3zkk:A, 3zkl:A
5 6r4v:C 294 68 0.0597 0.0646 0.2794 0.52 6g31:A, 6g31:B, 6g31:C, 6g31:D, 6g31:F, 6g31:G, 6g31:H, 6g31:I, 6g31:J, 6g31:K, 6g31:L, 2q80:A, 2q80:B, 2q80:C, 2q80:D, 2q80:E, 2q80:F, 6r4v:A, 6r4v:F, 6r4v:E, 6r4v:B, 6r4v:D
6 3lot:D 313 43 0.0629 0.0639 0.4651 0.92 3lot:A, 3lot:B, 3lot:C
7 4nx2:A 313 45 0.0503 0.0511 0.3556 1.4 2ag6:A, 7ckg:B, 3d6u:A, 3d6v:A, 2hgz:A, 4hjx:A, 4hjx:B, 4hpw:A, 1j1u:A, 5l7p:B, 3n2y:A, 3n2y:B, 5n5u:A, 4nda:A, 5nsf:B, 5nsf:A, 5nsf:C, 5nsf:D, 4pbr:A, 4pbs:A, 4pbt:A, 2pxh:A, 3qe4:A, 3qe4:B, 6wrk:A, 6wrn:A, 6wrq:A, 6wrt:A, 7ynw:A, 7ynw:B, 1zh0:A, 1zh6:A, 2zp1:A
8 2o2s:A 303 22 0.0377 0.0396 0.5455 1.5 3nj8:A, 3nj8:B, 4o1m:A, 4o1m:B, 4o1m:C, 4o1m:D, 4o1m:E, 4o1m:F, 2o2s:B
9 1vl8:B 252 79 0.0786 0.0992 0.3165 4.6 1vl8:A
10 2gcu:A 244 57 0.0503 0.0656 0.2807 6.5 2gcu:B, 2gcu:C, 2gcu:D
11 2n7l:C 140 92 0.0786 0.1786 0.2717 7.2 7sc2:A, 7sc3:A
12 3sx2:H 249 58 0.0535 0.0683 0.2931 8.7
13 2hk6:A 309 22 0.0377 0.0388 0.5455 9.3 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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