Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EKEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRVYEQYNVRMV

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l0v:A 61 61 1.0000 1.0000 1.0000 2.16e-40 6l0v:C, 6l0v:E, 6l0v:G, 6l0w:A, 6l0w:C
2 3mbe:C 192 54 0.2459 0.0781 0.2778 0.50 3mbe:G
3 4ci0:A 385 20 0.1475 0.0234 0.4500 0.91 4omf:A
4 2eek:A 220 20 0.1639 0.0455 0.5000 1.1
5 6mss:A 181 54 0.2459 0.0829 0.2778 1.2
6 2ro1:A 189 50 0.2459 0.0794 0.3000 1.3
7 3h70:A 342 19 0.1311 0.0234 0.4211 1.6
8 6z1h:A 382 31 0.1967 0.0314 0.3871 2.7
9 6z1m:A 423 32 0.1967 0.0284 0.3750 2.7 6z1m:B, 6z1m:C
10 4ub9:A 467 62 0.2787 0.0364 0.2742 3.2 4ub9:B, 4ub9:C, 4ub9:D, 4ub9:E, 4ub9:F, 4ub9:G, 4wgx:A
11 4m00:A 501 30 0.1639 0.0200 0.3333 3.3 4m01:A, 4m01:B, 4m01:C, 4m01:D, 4m02:A, 4m03:A
12 3a8g:B 212 63 0.3279 0.0943 0.3175 4.9 3a8h:B, 3a8m:B, 3a8o:B, 2cz1:B, 2cz6:B, 2d0q:B, 2qdy:B, 3x26:B
13 3s6h:A 436 35 0.2295 0.0321 0.4000 7.1 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
14 1a5i:A 265 20 0.1639 0.0377 0.5000 8.6

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218