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BioLiP
>protein
EKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fre:A 39 39 1.0000 1.0000 1.0000 1.57e-23
2 2egm:A 57 37 0.4103 0.2807 0.4324 6.73e-07
3 5olm:B 132 39 0.4359 0.1288 0.4359 2.75e-06 5jpx:A, 5olm:A
4 4tn3:B 362 35 0.3333 0.0359 0.3714 4.84e-06 5k3q:A, 5k3q:B, 5k3q:C, 5k3q:D, 4tn3:A, 5w9a:A, 5w9a:B
5 2yrg:A 59 37 0.3590 0.2373 0.3784 7.48e-06
6 7xyz:B 456 38 0.4103 0.0351 0.4211 1.43e-05 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
7 2did:A 53 37 0.3590 0.2642 0.3784 1.21e-04 2dif:A
8 7xt2:B 388 36 0.3590 0.0361 0.3889 1.72e-04 7xt2:A
9 5va4:A 123 34 0.3333 0.1057 0.3824 3.07e-04
10 5eiu:A 134 35 0.3077 0.0896 0.3429 7.54e-04 5eiu:D, 5f7t:E, 5f7t:F, 5f7t:H, 5f7t:L, 5iea:A, 5iea:B, 5iea:C, 5iea:D, 5iea:F, 5iea:K
11 2jun:A 101 35 0.3333 0.1287 0.3714 0.13 2dq5:A
12 2csv:A 72 38 0.2821 0.1528 0.2895 0.98
13 2yho:E 70 18 0.2051 0.1143 0.4444 1.2 2yhn:A, 2yhn:B, 2yho:A, 2yho:C, 2yho:G
14 2dja:A 84 35 0.2821 0.1310 0.3143 1.4
15 8i6y:A 844 23 0.2821 0.0130 0.4783 2.2 8i6y:B
16 6y2x:B 177 26 0.3077 0.0678 0.4615 3.8
17 2cd9:A 363 22 0.2308 0.0248 0.4091 8.1 2cd9:B, 2cda:A, 2cda:B, 2cdb:A, 2cdb:B, 2cdb:C, 2cdb:D, 2cdc:A, 2cdc:B, 2cdc:C, 2cdc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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