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BioLiP
>protein
EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vp2:A 83 74 1.0000 0.8916 1.0000 1.52e-49 7vp1:A, 7vp1:B, 7vp2:B, 7vp4:B, 7vp4:A, 7vp4:F, 7vp4:E, 7vp4:J, 7vp4:I, 7vp5:A, 7vp5:B, 7vp5:E, 7vp5:F, 7vp5:I, 7vp5:J, 7vp7:A, 7vp7:B
2 7vp3:C 62 55 0.2568 0.3065 0.3455 5.19e-06 7vp3:D, 7vp3:J, 7vp3:G, 7vp3:L, 7vp3:I, 7vp3:N, 7vp3:P
3 6xpn:B 259 33 0.1351 0.0386 0.3030 1.7 6xpn:A
4 3o8l:A 748 45 0.2432 0.0241 0.4000 2.5 3o8l:B, 3o8n:A, 3o8n:B
5 2yck:X 272 49 0.1757 0.0478 0.2653 3.3 2yci:X, 2ycj:A
6 3no5:E 275 17 0.1216 0.0327 0.5294 6.3 3no5:A, 3no5:B, 3no5:C, 3no5:D, 3no5:F
7 6pim:A 200 28 0.1351 0.0500 0.3571 7.7
8 8gy9:A 249 34 0.1757 0.0522 0.3824 8.4 8gy9:B, 8gya:A, 8gya:B, 8gyb:A, 8gyb:B, 8gyb:C, 8gyb:D
9 6vfp:A 439 27 0.1351 0.0228 0.3704 8.7 6bx7:A, 6mga:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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