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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLGDMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIIS
TILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVALS
VGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAAFTNFNLVALGVIGTVMAVLYIQL
SPKYNRV

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dyr:Y 248 247 1.0000 0.9960 1.0000 4.96e-176 7dyr:B, 7dyr:E, 6k1h:Y, 6k1h:E, 6k1h:B
2 7vlx:Y 247 243 0.4980 0.4980 0.5062 6.58e-73 7vlx:A, 7vlx:C, 7vly:Y, 7vly:C, 7vly:F
3 7xtg:D 248 246 0.4858 0.4839 0.4878 2.11e-62 7xno:Y, 7xno:D, 7xno:H, 7xtg:H, 7xtg:Y
4 8hfs:Y 249 233 0.4534 0.4498 0.4807 1.10e-53
5 3gqt:C 385 31 0.0607 0.0390 0.4839 0.22 3d6b:C, 3eon:C, 3gnc:A, 3gnc:B, 3gnc:C, 3gnc:D, 3gqt:A, 3gqt:B
6 7adr:E 466 152 0.1660 0.0880 0.2697 0.74 7adr:B, 7ady:B, 7ady:E, 7aiz:B, 7aiz:E, 6fea:B, 6fea:E, 5n6y:B, 5n6y:E
7 3oha:A 516 107 0.0972 0.0465 0.2243 0.86 3mfh:A, 3mfi:A, 3ohb:A, 2r8j:A, 2r8j:B, 2r8k:A, 2r8k:B, 5vtp:A, 2wtf:A, 2wtf:B, 2xgp:A, 2xgp:B, 2xgq:A, 2xgq:B
8 7w02:A 1566 136 0.1296 0.0204 0.2353 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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