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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK
DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKA

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ey1:A 137 130 1.0000 0.9489 1.0000 9.03e-93 8cty:G, 8cty:E, 8cty:C, 8cty:F, 8ctz:B, 8cu0:C, 3d0p:A, 3d0p:C, 6dmn:A, 6dmv:A, 6do8:A, 6do9:A, 6doa:A, 6dob:A, 6doc:A, 6dod:A, 6doe:A, 6dof:A, 6dog:A, 6doh:A, 6doi:A, 6doj:A, 6dok:A, 6dol:A, 6dom:A, 6don:A, 6doo:A, 6dop:A, 6doq:A, 6dor:A, 6dos:A, 6dot:A, 6dou:A, 6dov:A, 6dow:A, 6dox:A, 6doy:A, 6doz:A, 6dp0:A, 6dp1:A, 6dp2:A, 6dp3:A, 6dp4:A, 6dp5:A, 6dp6:A, 6dp7:A, 6dp8:A, 6dp9:A, 6dpa:A, 6dpb:A, 6dpc:A, 6dpd:A, 6dpe:A, 6dpf:A, 6dpg:A, 6dph:A, 6dpi:A, 6dpj:A, 6dpk:A, 6dpl:A, 6dpm:A, 6dpn:A, 6dpo:A, 6dpp:A, 2g8f:A, 2g8h:A, 2g8i:A, 2g8k:A, 2g8u:A, 2g8v:A, 2g8w:A, 4htu:A, 4htu:B, 4hue:A, 4hue:B, 4huf:A, 4huf:B, 4hug:A, 4hug:B, 3i8d:A, 3i8d:C, 4opj:A, 4opj:C, 4opk:A, 4opk:C, 2r7y:A, 8sv3:A, 8sv4:A, 5swm:A, 5swm:B, 3twh:A, 3uld:A, 5us2:A, 5usa:A, 5use:A, 5usg:A, 5vaj:A, 5vaj:B, 5w7n:A, 5w7o:A, 5wjr:A, 1zbi:A, 1zbi:B, 1zbl:A, 1zbl:B
2 3ery:B 149 55 0.1154 0.1007 0.2727 1.3
3 3h08:B 142 51 0.1385 0.1268 0.3529 2.0
4 4txd:A 336 71 0.1615 0.0625 0.2958 2.2
5 4msx:A 395 102 0.2000 0.0658 0.2549 2.3
6 8ye0:C 290 20 0.0846 0.0379 0.5500 4.4 8ye0:A, 8ye0:B, 8ye0:D
7 7f3x:A 449 82 0.1692 0.0490 0.2683 4.6 7f3x:B, 7f40:A, 7f40:B
8 7pog:A 2382 80 0.1769 0.0097 0.2875 7.3 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
9 6fxc:At 81 65 0.1308 0.2099 0.2615 8.4 7aso:A, 7asp:j, 7bgd:t, 8bh6:t, 8bh7:t, 8byv:t, 6fxc:Bt, 7kwg:t, 5li0:t, 5nd8:t, 5nd9:t, 5ngm:At, 7nhl:u, 7nhm:u, 8p2f:u, 8p2g:u, 8p2h:u, 7p48:t, 6s0x:t, 6s13:t, 5t7v:SA, 5tcu:SA, 8y38:t, 8y39:t, 6yef:t

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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