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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EIDAGYSSDSSTEDPYPDYDDFFTNTVRETPLSSAPEPKRRFAPSKHEQKRILQLAYAIRKGRILTSEQRAERER

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8eth:m 76 76 1.0000 0.9868 0.9868 1.64e-48 8eup:m, 8ev3:m
2 8euy:m 92 92 0.9733 0.7935 0.7935 2.60e-44
3 8esq:m 572 62 0.8267 0.1084 1.0000 1.49e-37 8esr:m, 8etg:m, 8eti:m, 8eug:m, 8eui:m
4 8esq:m 572 25 0.2133 0.0280 0.6400 0.001 8esr:m, 8etg:m, 8eti:m, 8eug:m, 8eui:m
5 8i9x:CC 658 54 0.4400 0.0502 0.6111 1.96e-16 8i9r:CC, 8i9t:CC, 8i9v:CC, 8i9w:CC, 8i9y:CC, 8i9z:CC, 8ia0:CC, 8pv2:CC
6 8i9p:CC 258 54 0.4400 0.1279 0.6111 2.22e-16
7 7nac:m 666 59 0.3600 0.0405 0.4576 3.11e-12 8e5t:s, 6em1:m, 6em3:B, 7nad:m, 7ohp:m, 7ohs:m, 7ohw:m, 7ohx:m, 7r6q:m, 7r72:m, 7r7a:m, 8v87:m
8 6elz:m 645 52 0.3467 0.0403 0.5000 3.97e-12 6em5:m, 7ohr:m, 7ohv:m
9 8v83:m 211 52 0.3467 0.1232 0.5000 3.97e-12 8v84:m
10 6cb1:s 512 60 0.3600 0.0527 0.4500 5.06e-12 6c0f:s
11 8fkp:SS 235 51 0.2400 0.0766 0.3529 1.35e-04 8fkq:SS, 8fkr:SS, 8fks:SS
12 8fky:SS 628 57 0.2533 0.0303 0.3333 3.45e-04 8fkt:SS, 8fku:SS, 8fkv:SS, 8fkw:SS, 8fkx:SS
13 4bif:A 131 18 0.1467 0.0840 0.6111 0.62 4bif:B, 4bif:C, 4bif:D, 4bif:E, 4bif:F, 4bif:G, 4bif:H, 8oz8:A, 8oz8:B, 8oz8:C, 8oz8:D, 4uxa:A, 4uxa:B, 4uxa:C, 4uxa:D, 4uxa:E, 4uxa:F, 4uxa:G, 4uxa:H, 4uxa:I, 4uxa:J, 4uxa:K, 4uxa:L, 4uxa:M, 4uxa:N, 4uxa:O, 4uxa:P, 4uxa:Q, 4uxa:R, 4uxa:S, 4uxa:T
14 8khv:A 579 44 0.2133 0.0276 0.3636 2.1
15 6hqv:A 1555 44 0.2000 0.0096 0.3409 2.6 6hqv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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