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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFMHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDER
KIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ghc:B 286 145 1.0000 0.5070 1.0000 3.04e-105 6ghc:A, 6r64:A, 6r64:B, 6t21:A, 6t21:B, 6t22:A, 6t22:B
2 5wzk:A 513 56 0.1241 0.0351 0.3214 1.1
3 5wzg:A 534 56 0.1241 0.0337 0.3214 1.1 5wzh:A, 5wzi:A, 5wzj:A
4 5c5c:A 432 90 0.1931 0.0648 0.3111 1.3
5 8a6t:B 630 48 0.0966 0.0222 0.2917 1.4 8a6t:E, 8bew:B, 8bew:E
6 7vob:C 327 24 0.0759 0.0336 0.4583 2.9 7voc:C
7 6eji:A 360 72 0.1172 0.0472 0.2361 3.1 6eji:B, 6ejj:A, 6ejj:B, 6ejk:A, 6ejk:B
8 1ne7:A 281 22 0.0690 0.0356 0.4545 4.4 1ne7:B, 1ne7:C, 1ne7:E, 1ne7:F, 1ne7:D
9 4kva:B 258 76 0.1448 0.0814 0.2763 5.3 4kv9:A, 4kv9:B, 4kva:A
10 6d73:A 1227 52 0.0897 0.0106 0.2500 7.0 6d73:C, 6pkx:B, 6pkx:D
11 2ze0:A 531 32 0.0828 0.0226 0.3750 7.4
12 6drj:A 1266 52 0.0897 0.0103 0.2500 7.5 6d73:B, 6d73:D, 6drj:B, 6drj:C, 6drj:D
13 6yw5:XX 408 30 0.0759 0.0270 0.3667 7.6 6ywe:XX, 6ywx:XX, 6ywy:XX
14 8c7f:A 772 41 0.1034 0.0194 0.3659 7.6 7zb3:A, 7zb3:B, 7zdy:W, 7zdy:Y, 7zgz:Y
15 7zgz:X 753 41 0.1034 0.0199 0.3659 7.7 8c7f:B
16 4v8m:Bh 188 25 0.0690 0.0532 0.4000 9.5 8ova:Bh, 8ove:Bh

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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